SMTL ID : 4ua4.1 (1 other biounit)

Structure of the VIM-2 Metallo-beta-Lactamase in Complex with a Bisthiazolidine Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.90, H.92, D.94, H.155, C.174 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.90, A:H.92, A:H.155, H2O.3 ZN.2: 5 residues within 4Å: Chain A: D.94, R.95, C.174, H.216 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.94, A:C.174, A:H.216, H2O.3

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.91, L.118, S.156, T.157, D.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.157, A:D.189 Water bridges: A:R.117, A:T.157

2 x 3C7: (3R,5R,7aS)-5-(sulfanylmethyl)tetrahydro[1,3]thiazolo[4,3-b][1,3]thiazole-3-carboxylic acid(Non-covalent)

3C7.4: 9 residues within 4Å: Chain A: Y.43, W.63, H.155, Y.177, R.181, G.185, N.186, H.216 Ligands: 3C7.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.186, A:N.186 Water bridges: A:Y.177, A:G.185 Salt bridges: A:H.155 3C7.5: 9 residues within 4Å: Chain A: F.38, F.91, H.92, D.93, D.94, E.122, N.124, N.186 Ligands: 3C7.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.93, A:N.124 Salt bridges: A:H.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spencer, J., Structure of the VIM-2 Metallo-beta-Lactamase in Complex with a Bisthiazolidine Inhibitor. To Be Published

Release Date

2014-09-17

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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