SMTL ID : 4uag.1

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: N.113, G.114, K.115, S.116, T.117, R.302, K.319 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.113, A:G.114, A:S.116, A:T.117, A:T.117 Water bridges: A:N.113, A:K.115, A:K.115, A:S.325 Salt bridges: A:R.302, A:K.319

1 x UAG: URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE(Non-covalent)

UAG.2: 29 residues within 4Å: Chain A: I.11, G.14, L.15, T.16, D.35, T.36, R.37, S.71, P.72, G.73, G.137, N.138, G.140, S.159, F.161, Q.162, H.183, T.321, K.348, A.414, S.415, L.416, N.421, F.422 Ligands: UNX.3, UNX.7, UNX.8, UNX.9, UNX.10 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:F.161, A:A.414, A:L.416 Hydrogen bonds: A:G.14, A:L.15, A:T.16, A:T.16, A:T.36, A:T.36, A:G.73, A:G.73, A:N.138, A:N.138, A:Q.162, A:S.415, A:F.422 Water bridges: A:G.17, A:T.36, A:R.37, A:R.37, A:S.71, A:G.137, A:N.138, A:S.159, A:H.183, A:T.321 Salt bridges: A:R.37, A:H.183, A:K.348

8 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 7 residues within 4Å: Chain A: N.138, I.139, F.422 Ligands: UAG.2, UNX.4, UNX.6, UNX.7 No protein-ligand interaction detected (PLIP) UNX.4: 9 residues within 4Å: Chain A: S.116, N.138, E.157, K.319 Ligands: UNX.3, UNX.5, UNX.6, UNX.7, UNX.8 No protein-ligand interaction detected (PLIP) UNX.5: 7 residues within 4Å: Chain A: K.319 Ligands: UNX.4, UNX.6, UNX.7, UNX.8, UNX.9, UNX.10 No protein-ligand interaction detected (PLIP) UNX.6: 10 residues within 4Å: Chain A: N.138, E.157, K.319 Ligands: UNX.3, UNX.4, UNX.5, UNX.7, UNX.8, UNX.9, UNX.10 No protein-ligand interaction detected (PLIP) UNX.7: 11 residues within 4Å: Chain A: N.138, E.157, F.422 Ligands: UAG.2, UNX.3, UNX.4, UNX.5, UNX.6, UNX.8, UNX.9, UNX.10 No protein-ligand interaction detected (PLIP) UNX.8: 8 residues within 4Å: Chain A: F.422 Ligands: UAG.2, UNX.4, UNX.5, UNX.6, UNX.7, UNX.9, UNX.10 No protein-ligand interaction detected (PLIP) UNX.9: 7 residues within 4Å: Chain A: N.138 Ligands: UAG.2, UNX.5, UNX.6, UNX.7, UNX.8, UNX.10 No protein-ligand interaction detected (PLIP) UNX.10: 7 residues within 4Å: Chain A: T.321 Ligands: UAG.2, UNX.5, UNX.6, UNX.7, UNX.8, UNX.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertrand, J.A. et al., Determination of the MurD mechanism through crystallographic analysis of enzyme complexes. J.Mol.Biol. (1999)

Release Date

2000-03-15

Peptides

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Related Entries With Identical Sequence