SMTL ID : 4uan.1

Structure of the Ssl1 laccase mutant H99Q with depleted type-2 copper ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: A.115, G.116, Y.117, I.143, V.144, R.145, D.149, R.209, T.210, Q.237 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.116, A:R.145, A:R.209, A:Q.237 Water bridges: A:D.149, A:V.150, A:V.150 GOL.2: 6 residues within 4Å: Chain A: A.248, L.266, L.268, G.278, Y.279 Chain B: L.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.278 Water bridges: A:A.248 GOL.8: 6 residues within 4Å: Chain B: R.14, I.16, L.43, I.44, E.45, L.46 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.14, B:E.45, B:E.45 Water bridges: B:E.45 GOL.9: 10 residues within 4Å: Chain B: A.115, G.116, Y.117, I.143, V.144, R.145, D.149, R.209, T.210, Q.237 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.116, B:Y.117, B:R.145, B:D.149, B:R.209, B:Q.237 GOL.10: 9 residues within 4Å: Chain A: Q.221, V.222, V.223 Chain B: G.116, Y.117, W.118, N.208, R.209, S.233 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:V.222, A:D.224, B:R.209, B:S.233, B:S.233 Hydrogen bonds: B:Y.117 GOL.14: 9 residues within 4Å: Chain C: A.115, G.116, Y.117, I.143, V.144, R.145, D.149, R.209, T.210 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.116, C:Y.117, C:R.145, C:D.149, C:R.209 Water bridges: C:Y.117, C:Q.237

9 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: Q.67, H.69, H.121 Chain C: H.254 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.69, A:H.121, C:H.254, H2O.8 CU.4: 4 residues within 4Å: Chain A: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.196, A:C.253, A:H.258 CU.5: 5 residues within 4Å: Chain A: H.199, H.201, H.252 Chain B: Q.67, H.123 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.201, A:H.252, B:H.123, H2O.6 CU.6: 5 residues within 4Å: Chain A: H.199, H.254 Chain B: Q.67, H.69, H.121 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.254, B:H.69, B:H.121, H2O.6 CU.7: 4 residues within 4Å: Chain A: H.123 Chain C: H.199, H.201, H.252 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.123, C:H.201, C:H.252, H2O.8 CU.11: 4 residues within 4Å: Chain B: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.196, B:C.253, B:H.258 CU.12: 5 residues within 4Å: Chain B: H.199, H.201, H.252 Chain C: Q.67, H.123 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.123, B:H.201, B:H.252, H2O.23 CU.13: 4 residues within 4Å: Chain B: H.254 Chain C: Q.67, H.69, H.121 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.69, C:H.121, B:H.254, H2O.23 CU.15: 4 residues within 4Å: Chain C: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.196, C:C.253, C:H.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunne, M. et al., Structure of the Ssl1 laccase mutant H99Q with depleted type-2 copper ion. To Be Published

Release Date

2015-08-26

Peptides

Copper oxidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Copper oxidase