SMTL ID : 4ubd.2 (1 other biounit)

Crystal structure of a neutralizing human monoclonal antibody with 1968 H3 HA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: N.157, T.159 Chain C: S.211, P.213, W.214 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.214 NAG-NAG-BMA-MAN.2: 3 residues within 4Å: Chain C: N.157, T.159 Chain D: W.214 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.214, D:W.214 NAG-NAG-BMA-MAN.3: 5 residues within 4Å: Chain A: S.211, P.213, W.214 Chain D: N.157, T.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.214

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 5 residues within 4Å: Chain D: N.30, A.31, T.32 Chain I: R.104, V.105 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:V.105

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.277, V.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.277 NAG.6: 5 residues within 4Å: Chain B: A.147, E.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.147 NAG.7: 6 residues within 4Å: Chain C: S.37, N.277, N.288, V.289, N.290 Chain E: E.69 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:N.277, C:N.290, E:E.69 NAG.8: 2 residues within 4Å: Chain D: N.277, V.289 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.277, D:N.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus. Nat Commun (2015)

Release Date

2015-06-24

Peptides

Hemagglutinin HA1 chain: ACD
Hemagglutinin HA2 chain: BEF
monoclonal antibody H chain: GIK
monoclonal antibody L chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

C
M

D
Q

B
V

E
N

F
R

G
Y

I
S

K
O

H
X

J
T

L
P

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

monoclonal antibody H chain

monoclonal antibody L chain

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