SMTL ID : 4ucz.1

X-ray structure and activities of an essential Mononegavirales L- protein domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.168, H.200, C.204, C.207 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.168, A:H.200, A:C.204, A:C.207 ZN.3: 5 residues within 4Å: Chain B: H.168, L.175, H.200, C.204, C.207 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.168, B:H.200, B:C.204, B:C.207

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 16 residues within 4Å: Chain A: Q.60, H.61, R.64, V.68, F.69, S.70, S.71, K.75, D.127, G.243, S.244, K.245, A.390, K.393, K.394, K.397 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Q.60, A:R.64, A:R.64, A:V.68, A:K.75, A:D.127, A:K.245, A:A.390, A:K.393, A:K.393, A:K.393 Salt bridges: A:K.393, A:K.397, A:K.397 pi-Stacking: A:H.61, A:H.61

1 x GMP: GUANOSINE(Non-covalent)

GMP.4: 14 residues within 4Å: Chain B: Q.60, H.61, R.64, V.68, F.69, S.70, S.71, T.72, K.75, G.243, S.244, K.245, K.393, K.397 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.60, B:R.64, B:R.64, B:S.71, B:T.72, B:K.75, B:G.243, B:K.393, B:K.397 Salt bridges: B:E.250 pi-Stacking: B:H.61, B:H.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paesen, G.C. et al., X-Ray Structure and Activities of an Essential Mononegavirales L-Protein Domain. Nat.Commun. (2015)

Release Date

2015-11-18

Peptides

RNA-DIRECTED RNA POLYMERASE L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-DIRECTED RNA POLYMERASE L

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