SMTL ID : 4ud8.1 (1 other biounit)

AtBBE15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.57, T.59, L.60, E.63 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 31 residues within 4Å: Chain A: L.110, R.111, S.112, G.113, G.114, H.115, D.116, Y.117, L.120, S.121, L.135, A.154, G.177, L.178, C.179, L.182, G.183, G.185, G.186, H.187, A.192, Y.193, G.238, G.239, G.242, V.243, I.244, Y.476, N.478, Y.479 Ligands: PE5.4 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:H.115, A:Y.117, A:L.182 Hydrogen bonds: A:L.110, A:S.112, A:S.112, A:G.113, A:G.114, A:H.115, A:D.116, A:D.116, A:S.121, A:S.121, A:L.178, A:G.183, A:G.183, A:G.186, A:H.187, A:Y.193, A:Y.193, A:G.239, A:I.244, A:I.244, A:Y.476, A:N.478, A:N.478, A:N.478 Water bridges: A:D.116, A:Y.117, A:G.238

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.431, G.432 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.431

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.4: 14 residues within 4Å: Chain A: Y.117, I.294, S.312, Q.314, I.354, G.356, F.373, N.375, F.377, I.409, Q.438, L.440, T.442 Ligands: FAD.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.373 Hydrogen bonds: A:Y.117, A:N.375

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: T.486, N.487, G.489, T.491 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.491

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daniel, B. et al., Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism. J.Biol.Chem. (2015)

Release Date

2015-06-10

Peptides

FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN

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