SMTL ID : 4udo.1

structure of Mn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: V.28, T.29, T.30, E.33, K.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.30, A:E.33 Water bridges: A:E.33, A:K.50 Salt bridges: A:K.50 SO4.2: 2 residues within 4Å: Chain A: T.44, S.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.45 Water bridges: A:A.46 SO4.3: 3 residues within 4Å: Chain A: T.44, A.46, D.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.44 Water bridges: A:T.44, A:S.45 SO4.4: 2 residues within 4Å: Chain A: S.150, R.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.150 Water bridges: A:S.150 Salt bridges: A:R.264 SO4.5: 4 residues within 4Å: Chain A: Y.245, S.250, K.251, G.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.245, A:K.251 Salt bridges: A:K.251

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: H.205, N.208, Q.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.205, A:N.208, A:Q.209 GOL.8: 4 residues within 4Å: Chain A: S.199, P.200, S.201, R.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.199, A:R.204, A:R.204

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.7: 5 residues within 4Å: Chain A: H.39, H.106, E.172, N.193, D.247 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.39, A:H.106, A:E.172, A:E.172, A:D.247

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 5 residues within 4Å: Chain A: E.95, S.186, L.187, Y.188, M.202 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.187 Hydrogen bonds: A:S.186 Salt bridges: A:H.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, N. et al., Crystal Structure of a Periplasmic Solute Binding Protein in Metal-Free, Intermediate and Metal-Bound States from Candidatus Liberibacter Asiaticus. J.Struct.Biol. (2015)

Release Date

2015-02-11

Peptides

PERIPLASMIC SOLUTE BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PERIPLASMIC SOLUTE BINDING PROTEIN

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