SMTL ID : 4uhn.1

Characterization of a Novel Transaminase from Pseudomonas sp. Strain AAC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.200 Chain B: D.200 Ligands: MG.6 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.200, H2O.4, H2O.4, H2O.11, H2O.11 MG.6: 3 residues within 4Å: Chain A: D.200 Chain B: D.200 Ligands: MG.1 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.200, H2O.4, H2O.4, H2O.11, H2O.11

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.44, Y.173, N.189, S.251, R.434 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.189, A:S.251, A:R.434 Water bridges: A:S.251 GOL.7: 5 residues within 4Å: Chain B: F.44, Y.173, N.189, S.251, R.434 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.189, B:S.251, B:R.434 Water bridges: B:S.251

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 1 residues within 4Å: Chain A: V.58 No protein-ligand interaction detected (PLIP) ACY.8: 1 residues within 4Å: Chain B: V.58 No protein-ligand interaction detected (PLIP)

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.4: 12 residues within 4Å: Chain A: S.139, G.140, S.141, Y.173, H.174, G.175, E.246, S.251, D.279, V.281, I.282, K.308 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.246, A:V.281 Hydrogen bonds: A:S.139, A:G.140, A:S.141, A:S.141, A:K.308 Water bridges: A:E.246, A:S.251 pi-Stacking: A:Y.173 PLP.9: 12 residues within 4Å: Chain B: S.139, G.140, S.141, Y.173, H.174, G.175, E.246, S.251, D.279, V.281, I.282, K.308 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:E.246, B:V.281 Hydrogen bonds: B:S.139, B:G.140, B:S.141, B:S.141, B:K.308 Water bridges: B:E.246, B:S.251 pi-Stacking: B:Y.173

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: A.124, T.127, P.128, L.131, D.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.127, A:T.127, A:D.132 NA.10: 5 residues within 4Å: Chain B: A.124, T.127, P.128, L.131, D.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.127, B:T.127, B:D.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilding, M. et al., A Beta-Alanine Catabolism Pathway Containing a Highly Promiscuous Omega-Transaminase in the 12-Aminododecanate-Degrading Pseudomonas Sp. Strain Aac. Appl.Environ.Microbiol. (2016)

Release Date

2016-04-13

Peptides

OMEGA AMINO ACID-PYRUVATE AMINOTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

OMEGA AMINO ACID-PYRUVATE AMINOTRANSFERASE

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