SMTL ID : 4uib.1

Crystal structure of 3p in complex with tafCPB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.66, E.69, H.194 Ligands: GWX.9 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.66, A:E.69, A:E.69, A:H.194 ZN.2: 3 residues within 4Å: Chain A: R.81, E.82, E.289 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.82, A:E.289, A:E.289, H2O.8 ZN.3: 1 residues within 4Å: Chain A: H.305 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.305, H2O.18

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: N.55, P.57, S.185, S.186, K.188 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.57 Hydrogen bonds: A:N.55, A:N.55 Salt bridges: A:K.188

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: S.91, T.94, E.95, N.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.91, A:N.98 GOL.6: 8 residues within 4Å: Chain A: L.184, S.185, S.186, I.187, K.188, G.260, I.261, Y.307 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.185, A:K.188, A:G.260, A:Y.307 GOL.7: 3 residues within 4Å: Chain A: K.48, Y.103, N.183 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.48, A:Y.103, A:N.183, A:N.183 GOL.8: 4 residues within 4Å: Chain A: Y.202, L.210, N.214, P.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.202, A:N.214

1 x GWX: (2S)-6-AMINO-2-[[(1R)-1-(CYCLOHEXYLMETHYL)-2-OXO-2-[[(2S)-1,7,7-TRIMETHYLNORBORNAN-2-YL]AMINO]ETHYL]ARBAMOYLAMINO]HEXANOIC ACID(Non-covalent)

GWX.9: 19 residues within 4Å: Chain A: H.66, R.68, E.69, R.124, N.141, R.142, E.160, T.161, S.195, Y.196, V.201, S.205, L.245, Y.246, D.253, T.266, E.268, F.277 Ligands: ZN.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:E.160, A:T.161, A:Y.196, A:V.201, A:L.245, A:Y.246, A:F.277 Hydrogen bonds: A:R.68, A:R.124, A:R.124, A:N.141, A:Y.246, A:Y.246, A:T.266, A:T.266 Water bridges: A:Y.196, A:Y.246 Salt bridges: A:H.66, A:R.124, A:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halland, N. et al., Novel Small Molecule Inhibitors of Activated Thrombin Activatable Fibrinolysis Inhibitor (Tafia) from Natural Product Anabaenopeptin. J.Med.Chem. (2015)

Release Date

2015-06-03

Peptides

CARBOXYPEPTIDASE B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CARBOXYPEPTIDASE B

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