- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: D.37, D.39, D.130, D.134
- Ligands: PO4.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.37, A:D.39, A:D.130, H2O.1, H2O.1
MG.6: 5 residues within 4Å:- Chain B: D.37, D.39, D.130, D.134
- Ligands: PO4.5
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.37, B:D.39, B:D.130, H2O.2, H2O.2
MG.11: 5 residues within 4Å:- Chain C: D.37, D.39, D.130, D.134
- Ligands: PO4.10
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.37, C:D.39, C:D.130, H2O.2, H2O.4
MG.14: 4 residues within 4Å:- Chain D: D.37, D.39, D.130
- Ligands: PO4.13
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.37, D:D.39, D:D.130, H2O.6, H2O.6
- 4 x KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid(Non-covalent)
KDO.3: 11 residues within 4Å:- Chain A: V.61, Q.62, G.64, L.65, R.91
- Chain C: D.39, G.82, R.83, D.105, P.133
- Ligands: PO4.10
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:G.64, A:L.65, C:D.39, C:D.39, C:R.83
- Salt bridges: A:R.91, C:R.83
KDO.7: 9 residues within 4Å:- Chain A: G.82, R.83, D.105
- Chain B: V.61, G.64, L.65, Q.68, R.91
- Ligands: PO4.1
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:G.64, B:L.65, B:Q.68, B:Q.68, A:G.82, A:R.83, A:D.105
- Salt bridges: B:R.91, A:R.83
KDO.8: 9 residues within 4Å:- Chain B: D.39, R.83, P.133
- Chain D: V.61, G.64, L.65, Q.68, R.91
- Ligands: PO4.5
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:L.65, D:Q.68, D:Q.68, B:D.39, B:R.83
- Salt bridges: D:R.91, B:R.83
KDO.12: 11 residues within 4Å:- Chain C: V.61, G.64, L.65, Q.68, R.91
- Chain D: D.39, G.82, R.83, D.105, P.133
- Ligands: PO4.13
8 PLIP interactions:3 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:G.64, C:L.65, D:D.39, D:R.83, D:D.105, D:D.105
- Salt bridges: C:R.91, D:R.83
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dhindwal, S. et al., Ligand-Bound Structures of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphatase from Moraxella Catarrhalis Reveal a Water Channel Connecting to the Active Site for the Second Step of Catalysis. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-02-11
- Peptides
- 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE KDSC: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dhindwal, S. et al., Ligand-Bound Structures of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphatase from Moraxella Catarrhalis Reveal a Water Channel Connecting to the Active Site for the Second Step of Catalysis. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-02-11
- Peptides
- 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE KDSC: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D