SMTL ID : 4umm.1

The Cryo-EM structure of the palindromic DNA-bound USP-EcR nuclear receptor reveals an asymmetric organization with allosteric domain positioning

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 11.60 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x EPH: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

EPH.1: 20 residues within 4Å: Chain E: L.28, V.36, P.37, F.40, V.44, L.47, C.48, G.51, N.85, L.88, M.121, L.129, Q.136, A.137, V.139, F.143, S.229, H.232, F.236, L.238 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:L.28, E:V.36, E:V.44, E:L.47, E:L.47, E:L.88, E:V.139, E:F.143, E:H.232, E:F.236, E:F.236, E:L.238

1 x P1A: 2,3,14,20,22-PENTAHYDROXYCHOLEST-7-EN-6-ONE(Non-covalent)

P1A.2: 21 residues within 4Å: Chain F: E.43, Q.44, P.45, I.73, M.76, T.77, T.80, M.114, R.117, V.118, R.121, L.130, F.131, A.132, Y.142, M.147, V.150, L.154, N.238, C.242, W.260 20 PLIP interactions: 20 interactions with chain F Hydrophobic interactions: F:I.73, F:M.76, F:T.77, F:V.118, F:V.118, F:R.121, F:F.131, F:F.131, F:A.132, F:L.154, F:W.260 Hydrogen bonds: F:E.43, F:T.80, F:T.80, F:R.117, F:R.117, F:R.121, F:A.132, F:Y.142, F:Y.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maletta, M. et al., The Palindromic DNA-Bound Usp-Ecr Nuclear Receptor Adopts an Asymmetric Organization with Allosteric Domain Positioning. Nat.Commun. (2014)

Release Date

2014-06-25

Peptides

ECR-USP: A
ECDYSONE RECEPTOR: D
GENE REGULATION PROTEIN: E
ECDYSONE RECEPTOR: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
E

E
F

F
G

ECR-USP

ECDYSONE RECEPTOR

GENE REGULATION PROTEIN

ECDYSONE RECEPTOR

Related Entries With Identical Sequence