SMTL ID : 4unw.1

Structure of the A_Equine_Newmarket_2_93 H3 haemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.47, N.48, I.268, D.269, T.270 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: N.32, A.33, T.34 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain C: N.47, N.48, I.268, D.269, T.270 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.270 NAG-NAG.7: 2 residues within 4Å: Chain C: R.56, N.57 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 4 residues within 4Å: Chain C: N.32, A.33, T.34, T.312 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 5 residues within 4Å: Chain E: N.32, T.34, T.312 Chain F: L.52, I.56 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:I.56

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.2: 7 residues within 4Å: Chain A: N.159, T.161, M.238 Chain E: S.213, R.214, P.215, W.216 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.216

4 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN.3: 4 residues within 4Å: Chain A: N.279, V.291, N.292 Chain B: E.69 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.293 NAG-NAG-BMA-MAN-MAN.8: 7 residues within 4Å: Chain A: S.213, P.215, W.216 Chain C: N.159, T.161, I.236, M.238 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.236 Hydrogen bonds: A:W.216 NAG-NAG-BMA-MAN-MAN.9: 4 residues within 4Å: Chain C: N.279, V.291, N.292 Chain D: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.12: 7 residues within 4Å: Chain C: S.213, P.215, W.216 Chain E: N.159, T.161, I.236, M.238 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:T.161, E:I.236 Hydrogen bonds: C:W.216

2 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.5: 6 residues within 4Å: Chain B: N.146, A.147, G.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-FUL.11: 6 residues within 4Å: Chain D: A.147, G.150, S.151, R.153, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.154, D:R.153, D:R.153

1 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-NAG-MAN.13: 5 residues within 4Å: Chain E: N.279, N.292, K.293 Chain F: K.68, E.69 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:K.293, E:K.293, E:K.293

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 2 residues within 4Å: Chain A: R.56, N.57 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.56 Water bridges: A:N.57 NAG.16: 1 residues within 4Å: Chain C: N.16 No protein-ligand interaction detected (PLIP) NAG.17: 4 residues within 4Å: Chain E: N.47, I.268, D.269, T.270 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.47, E:T.270, E:T.270 NAG.18: 3 residues within 4Å: Chain E: R.56, N.57, F.88 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:R.56 Hydrogen bonds: E:N.57 NAG.19: 1 residues within 4Å: Chain E: N.16 No protein-ligand interaction detected (PLIP) NAG.20: 3 residues within 4Å: Chain F: S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.154, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

H3 HAEMAGGLUTININ HA1 CHAIN: ACE
H3 HAEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

H3 HAEMAGGLUTININ HA1 CHAIN

H3 HAEMAGGLUTININ HA2 CHAIN

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