SMTL ID : 4uo1.1

Structure of the A_Equine_Richmond_07 H3 haemagglutinin in complex with 3SLN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: R.62, N.63 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: P.284, N.285, N.298 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain C: N.53, I.274, D.275 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain E: N.38, A.39, T.40 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG-NAG-BMA-MAN-MAN.2: 7 residues within 4Å: Chain A: N.165, I.242, M.244 Chain E: S.219, P.221, W.222 Ligands: NAG-GAL-SIA.14 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:W.222 Hydrophobic interactions: A:I.242 NAG-NAG-BMA-MAN-MAN.9: 6 residues within 4Å: Chain A: S.219, R.220, P.221, W.222 Chain C: N.165, M.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.222 NAG-NAG-BMA-MAN-MAN.11: 6 residues within 4Å: Chain C: S.219, R.220, P.221, W.222 Chain E: N.165, M.244 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.222

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUC.4: 2 residues within 4Å: Chain A: N.8 Chain B: S.29 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 3 residues within 4Å: Chain A: N.38, A.39, T.40 No protein-ligand interaction detected (PLIP)

1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.6: 10 residues within 4Å: Chain A: Y.98, R.135, S.136, G.137, W.153, H.183, E.190, L.194, Q.226, G.228 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.153 Hydrogen bonds: A:Y.98, A:R.135, A:G.137, A:H.183, A:Q.226, A:Q.226

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.7: 6 residues within 4Å: Chain B: A.147, G.150, S.151, R.153, N.154, T.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.154

2 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL-SIA.10: 11 residues within 4Å: Chain C: Y.98, R.135, S.136, G.137, W.153, H.183, E.190, K.193, L.194, Q.226, G.228 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.190, C:E.190, C:K.193, C:Q.226, C:Q.226, C:R.135, C:G.137, C:H.183, C:Q.226, C:Q.226, C:Q.226 NAG-GAL-SIA.14: 10 residues within 4Å: Chain E: Y.98, R.135, S.136, G.137, W.153, H.183, L.194, G.225, Q.226 Ligands: NAG-NAG-BMA-MAN-MAN.2 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:G.225, E:Q.226, E:R.135, E:G.137, E:Q.226 Hydrophobic interactions: E:W.153

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG-NAG-FUC.12: 1 residues within 4Å: Chain E: N.8 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.15: 5 residues within 4Å: Chain F: A.147, G.150, R.153, N.154, T.156 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)

NAG.16: 4 residues within 4Å: Chain A: N.53, I.274, D.275, I.276 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.274 NAG.17: 3 residues within 4Å: Chain C: N.38, T.40 Ligands: NAG.18 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.38, C:T.40 NAG.18: 2 residues within 4Å: Chain D: N.49 Ligands: NAG.17 No protein-ligand interaction detected (PLIP) NAG.20: 7 residues within 4Å: Chain D: A.147, G.150, S.151, N.154, T.156 Ligands: FUC.19, NAG.21 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.147, D:N.154 NAG.21: 1 residues within 4Å: Ligands: NAG.20 No protein-ligand interaction detected (PLIP) NAG.22: 4 residues within 4Å: Chain E: P.284, N.285, N.298 Chain F: E.69 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:E.69, E:N.298 NAG.23: 2 residues within 4Å: Chain E: A.21, N.22 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:A.21

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.19: 2 residues within 4Å: Chain D: R.153 Ligands: NAG.20 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

HEMAGGLUTININ: ACE
HEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

HEMAGGLUTININ

HEMAGGLUTININ

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