SMTL ID : 4uo3.1

Structure of the A_Equine_Richmond_07 H3 haemagglutinin mutant Ser30Thr

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 3 residues within 4Å: Chain A: N.6 Chain B: S.29, K.143 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.29

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN.2: 5 residues within 4Å: Chain A: N.163, I.240 Chain E: S.217, P.219, W.220 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:W.220 Hydrophobic interactions: A:I.240 NAG-NAG-BMA-MAN-MAN.4: 6 residues within 4Å: Chain C: N.36, T.38, E.289, T.316 Chain D: L.52, E.57 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.57, C:E.289 NAG-NAG-BMA-MAN-MAN.5: 7 residues within 4Å: Chain A: S.217, P.219, W.220 Chain C: N.163, T.165, I.240, M.242 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:W.220 Hydrophobic interactions: C:I.240

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN-FUC.3: 4 residues within 4Å: Chain C: N.20, G.21, T.22, E.33 No protein-ligand interaction detected (PLIP)

2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.6: 5 residues within 4Å: Chain D: A.147, G.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.154 NAG-FUC.9: 5 residues within 4Å: Chain F: A.147, G.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.154

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.7: 3 residues within 4Å: Chain E: N.36, A.37, T.38 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.8: 7 residues within 4Å: Chain C: S.217, P.219, W.220 Chain E: N.163, T.165, I.240, M.242 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:I.240 Hydrogen bonds: C:W.220

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 3 residues within 4Å: Chain A: N.36, A.37, T.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.36, A:T.38, A:T.38 NAG.11: 3 residues within 4Å: Chain A: R.60, N.61, F.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.60 Water bridges: A:N.61 NAG.12: 3 residues within 4Å: Chain A: N.283, N.296 Chain B: E.69 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.296, B:E.69 NAG.14: 4 residues within 4Å: Chain B: A.147, G.150, N.154, T.156 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.156 NAG.15: 3 residues within 4Å: Chain C: N.283, V.295, N.296 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.296, D:E.69 NAG.16: 5 residues within 4Å: Chain E: P.282, N.283, V.295, N.296 Chain F: E.69 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:E.69, E:N.296 Hydrophobic interactions: E:N.283

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.13: 6 residues within 4Å: Chain A: G.122, F.123, T.124, V.164, T.165, M.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.122, A:T.124, A:T.124, A:T.165 EDO.17: 5 residues within 4Å: Chain E: N.131, G.132, R.133, S.144, F.145 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.131 EDO.18: 4 residues within 4Å: Chain B: E.128 Chain F: R.127, E.128, A.130 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.130, F:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

H3 HAEMAGGLUTININ HA1 CHAIN: ACE
H3 HAEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

H3 HAEMAGGLUTININ HA1 CHAIN

H3 HAEMAGGLUTININ HA2 CHAIN

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