SMTL ID : 4uo4.1

Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.37, T.39, T.317 Chain B: N.49 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.49 NAG-NAG.8: 3 residues within 4Å: Chain C: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain C: N.37, T.39, T.317 Chain D: N.49 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.49 NAG-NAG.15: 3 residues within 4Å: Chain E: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 4 residues within 4Å: Chain E: N.37, T.39, T.317 Chain F: N.49 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.49

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.3: 7 residues within 4Å: Chain A: N.164, T.166, I.241, M.243 Chain C: S.218, P.220, L.221 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.241 Hydrogen bonds: C:L.221 NAG-NAG-BMA-MAN.10: 7 residues within 4Å: Chain C: N.164, T.166, I.241, M.243 Chain E: S.218, P.220, L.221 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:I.241 Hydrogen bonds: E:L.221 NAG-NAG-BMA-MAN.17: 7 residues within 4Å: Chain A: S.218, P.220, L.221 Chain E: N.164, T.166, I.241, M.243 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:L.221 Hydrophobic interactions: E:I.241

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 6 residues within 4Å: Chain A: S.44, N.284, V.296, N.297, K.298 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.11: 6 residues within 4Å: Chain C: S.44, N.284, V.296, N.297, K.298 Chain D: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.18: 6 residues within 4Å: Chain E: S.44, N.284, V.296, N.297, K.298 Chain F: E.69 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.21 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain C: N.21 No protein-ligand interaction detected (PLIP) NAG.19: 1 residues within 4Å: Chain E: N.21 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: R.320 Chain B: G.1, A.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.1 Salt bridges: A:R.320 SO4.7: 5 residues within 4Å: Chain B: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.15, B:G.16 Salt bridges: B:R.25 SO4.13: 3 residues within 4Å: Chain C: R.320 Chain D: G.1, A.7 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.1 Salt bridges: C:R.320 SO4.14: 5 residues within 4Å: Chain D: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.15, D:G.16 Salt bridges: D:R.25 SO4.20: 3 residues within 4Å: Chain E: R.320 Chain F: G.1, A.7 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.1 Salt bridges: E:R.320 SO4.21: 5 residues within 4Å: Chain F: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.15, F:G.16 Salt bridges: F:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

H3 HAEMAGGLUTININ HA1 CHAIN: ACE
H3 HAEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

H3 HAEMAGGLUTININ HA1 CHAIN

H3 HAEMAGGLUTININ HA2 CHAIN

Related Entries With Identical Sequence