SMTL ID : 4uo8.1

Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin in complex with 6SO4-3SLN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 3 residues within 4Å: Chain C: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 3 residues within 4Å: Chain E: R.61, N.62, F.93 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN.2: 3 residues within 4Å: Chain A: N.37, T.317 Ligands: NAG.6 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.3: 7 residues within 4Å: Chain A: N.164, T.166, I.241, M.243 Chain E: S.218, P.220, L.221 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:I.241 Hydrogen bonds: E:L.221 NAG-NAG-BMA-MAN-MAN.11: 3 residues within 4Å: Chain C: N.37, T.317 Ligands: NAG.15 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.12: 7 residues within 4Å: Chain A: S.218, P.220, L.221 Chain C: N.164, T.166, I.241, M.243 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:L.221 Hydrophobic interactions: C:I.241 NAG-NAG-BMA-MAN-MAN.20: 3 residues within 4Å: Chain E: N.37, T.317 Ligands: NAG.24 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.21: 7 residues within 4Å: Chain C: S.218, P.220, L.221 Chain E: N.164, T.166, I.241, M.243 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:L.221 Hydrophobic interactions: E:I.241

3 x NAG- NAG- BMA- MAN- BMA: beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-BMA.4: 5 residues within 4Å: Chain A: P.283, N.284, V.296, N.297 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-BMA.13: 5 residues within 4Å: Chain C: P.283, N.284, V.296, N.297 Chain D: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-BMA.22: 5 residues within 4Å: Chain E: P.283, N.284, V.296, N.297 Chain F: E.69 No protein-ligand interaction detected (PLIP)

3 x NGS- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose

NGS-GAL-SIA.5: 13 residues within 4Å: Chain A: Y.97, G.133, R.134, S.135, G.136, W.152, T.154, H.182, E.189, K.192, L.193, Q.225, G.227 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.225, A:Q.225, A:Y.97, A:R.134, A:R.134, A:G.136, A:H.182, A:Q.225, A:Q.225 Salt bridges: A:K.192 Hydrophobic interactions: A:L.193 NGS-GAL-SIA.14: 13 residues within 4Å: Chain C: Y.97, G.133, R.134, S.135, G.136, W.152, T.154, H.182, E.189, K.192, L.193, Q.225, G.227 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.225, C:Q.225, C:Y.97, C:R.134, C:R.134, C:G.136, C:H.182, C:Q.225, C:Q.225 Salt bridges: C:K.192 Hydrophobic interactions: C:L.193 NGS-GAL-SIA.23: 13 residues within 4Å: Chain E: Y.97, G.133, R.134, S.135, G.136, W.152, T.154, H.182, E.189, K.192, L.193, Q.225, G.227 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:Q.225, E:Q.225, E:Y.97, E:R.134, E:R.134, E:G.136, E:H.182, E:Q.225, E:Q.225 Salt bridges: E:K.192 Hydrophobic interactions: E:L.193

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain A: N.21, T.23, N.37 Ligands: NAG-NAG-BMA-MAN-MAN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.21 NAG.15: 4 residues within 4Å: Chain C: N.21, T.23, N.37 Ligands: NAG-NAG-BMA-MAN-MAN.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.21 NAG.24: 4 residues within 4Å: Chain E: N.21, T.23, N.37 Ligands: NAG-NAG-BMA-MAN-MAN.20 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.21

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: R.320 Chain B: A.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.320 SO4.8: 4 residues within 4Å: Chain A: R.134, R.140, D.144, S.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.145, A:S.145 Salt bridges: A:R.134, A:R.140 SO4.9: 5 residues within 4Å: Chain B: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.15, B:G.16 Salt bridges: B:R.25 SO4.16: 2 residues within 4Å: Chain C: R.320 Chain D: A.7 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.320 SO4.17: 4 residues within 4Å: Chain C: R.134, R.140, D.144, S.145 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.145, C:S.145 Salt bridges: C:R.134, C:R.140 SO4.18: 5 residues within 4Å: Chain D: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.15, D:G.16 Salt bridges: D:R.25 SO4.25: 2 residues within 4Å: Chain E: R.320 Chain F: A.7 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.320 SO4.26: 4 residues within 4Å: Chain E: R.134, R.140, D.144, S.145 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.145, E:S.145 Salt bridges: E:R.134, E:R.140 SO4.27: 5 residues within 4Å: Chain F: G.13, W.14, E.15, G.16, R.25 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.15, F:G.16 Salt bridges: F:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HA1

HA2

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