SMTL ID : 4uoa.1

Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin Met29Ile mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.20 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 1 residues within 4Å: Chain C: N.20 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 1 residues within 4Å: Chain E: N.20 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 3 residues within 4Å: Chain A: R.60, N.61, F.92 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 2 residues within 4Å: Chain A: N.36, T.316 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.12: 3 residues within 4Å: Chain C: R.60, N.61, F.92 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.13: 2 residues within 4Å: Chain C: N.36, T.316 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.22: 3 residues within 4Å: Chain E: R.60, N.61, F.92 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.23: 2 residues within 4Å: Chain E: N.36, T.316 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.4: 7 residues within 4Å: Chain A: N.163, T.165, I.240, M.242 Chain E: S.217, P.219, L.220 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:I.240 Hydrogen bonds: E:L.220 NAG-NAG-BMA-MAN.5: 5 residues within 4Å: Chain A: S.43, N.283, V.295, N.296 Chain C: T.260 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.14: 7 residues within 4Å: Chain A: S.217, P.219, L.220 Chain C: N.163, T.165, I.240, M.242 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:L.220 Hydrophobic interactions: C:I.240 NAG-NAG-BMA-MAN.15: 5 residues within 4Å: Chain C: S.43, N.283, V.295, N.296 Chain E: T.260 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.24: 7 residues within 4Å: Chain C: S.217, P.219, L.220 Chain E: N.163, T.165, I.240, M.242 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:I.240 Hydrogen bonds: C:L.220 NAG-NAG-BMA-MAN.25: 5 residues within 4Å: Chain A: T.260 Chain E: S.43, N.283, V.295, N.296 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: N.6, N.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.7 NAG.16: 2 residues within 4Å: Chain C: N.6, N.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.7 NAG.26: 2 residues within 4Å: Chain E: N.6, N.7 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.7

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 1 residues within 4Å: Chain A: R.55 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.55 SO4.8: 4 residues within 4Å: Chain A: S.93, P.97, Y.98, R.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.93, A:S.93, A:Y.98 Salt bridges: A:R.222 SO4.9: 2 residues within 4Å: Chain A: R.319 Chain B: A.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.319 SO4.10: 6 residues within 4Å: Chain A: E.323 Chain B: G.13, W.14, E.15, G.16, R.25 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.15, B:G.16, A:E.323 Salt bridges: B:R.25 SO4.17: 1 residues within 4Å: Chain C: R.55 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.55 SO4.18: 4 residues within 4Å: Chain C: S.93, P.97, Y.98, R.222 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.93, C:S.93, C:Y.98 Salt bridges: C:R.222 SO4.19: 2 residues within 4Å: Chain C: R.319 Chain D: A.7 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.319 SO4.20: 6 residues within 4Å: Chain C: E.323 Chain D: G.13, W.14, E.15, G.16, R.25 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.15, D:G.16, C:E.323 Salt bridges: D:R.25 SO4.27: 1 residues within 4Å: Chain E: R.55 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.55 SO4.28: 4 residues within 4Å: Chain E: S.93, P.97, Y.98, R.222 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.93, E:S.93, E:Y.98 Salt bridges: E:R.222 SO4.29: 2 residues within 4Å: Chain E: R.319 Chain F: A.7 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.319 SO4.30: 6 residues within 4Å: Chain E: E.323 Chain F: G.13, W.14, E.15, G.16, R.25 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:E.15, F:G.16, E:E.323 Salt bridges: F:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Recent Evolution of Equine Influenza and the Origin of Canine Influenza. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HA1

HA2