SMTL ID : 4upa.1

Crystal structure of Entamoeba histolytica lysyl-tRNA synthetase in complex with AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 7 residues within 4Å: Chain A: R.259, T.266, H.267, N.268, F.271, R.547, I.558 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.259, A:N.268, A:N.268, A:R.547, A:R.547 Salt bridges: A:R.259 pi-Stacking: A:F.271, A:F.271 ANP.2: 7 residues within 4Å: Chain B: R.259, T.266, H.267, N.268, F.271, R.547, I.558 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.259, B:N.268, B:N.268, B:R.547, B:R.547 Salt bridges: B:R.259 pi-Stacking: B:F.271, B:F.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal Structures of Entamoeba Histolytica Lysyl-tRNA Synthetase Reveal Conformational Changes Upon Lysine Binding and a Specific Helix Bundle Domain. FEBS Lett. (2014)

Release Date

2014-10-29

Peptides

LYSINE--TRNA LIGASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LYSINE--TRNA LIGASE

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