- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GLY: GLYCINE(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.2: 12 residues within 4Å:- Chain A: H.185, C.188, R.190, L.191, F.194, C.213, L.214, Y.215, C.219, G.221, P.222, V.240
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:H.185, A:C.188, A:C.213, A:C.219
SF4.4: 12 residues within 4Å:- Chain A: E.17, C.18, G.20, C.21, G.113, T.114, C.115, G.147, C.148, P.149
- Chain B: R.84, H.242
5 PLIP interactions:5 interactions with chain A,- Salt bridges: A:E.76
- Metal complexes: A:C.18, A:C.21, A:C.115, A:C.148
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 1 x SOT: morpholine-4-sulfonic acid(Covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 5 residues within 4Å:- Chain A: E.206, K.209, K.210
- Chain B: N.468
- Ligands: GOL.9
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.468, A:E.206
- Water bridges: A:K.210
GOL.7: 6 residues within 4Å:- Chain A: D.44, Q.63, A.64, G.67
- Chain B: T.194
- Ligands: H2S.8
12 PLIP interactions:9 interactions with chain A, 3 interactions with chain B- Water bridges: A:S.42, A:S.42, A:D.44, A:A.64, A:A.64, A:G.67, A:K.68, A:K.68, A:D.69, B:G.191
- Hydrogen bonds: B:T.194, B:T.194
GOL.9: 4 residues within 4Å:- Chain A: K.209
- Chain B: T.258, N.468
- Ligands: GOL.6
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.468
GOL.14: 9 residues within 4Å:- Chain B: R.114, N.118, F.309, A.310, T.311, Q.324, W.456, E.459
- Ligands: GOL.16
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.114, B:R.114, B:N.118, B:F.309
GOL.15: 8 residues within 4Å:- Chain B: L.320, A.321, S.327, V.338, D.339, N.340, K.409
- Ligands: GOL.17
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.327, B:S.327, B:V.338, B:K.409
- Water bridges: B:A.321, B:N.340
GOL.16: 5 residues within 4Å:- Chain B: Q.324, K.455, W.456, E.459
- Ligands: GOL.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.324, B:W.456
GOL.17: 7 residues within 4Å:- Chain B: E.317, L.320, A.321, S.327, N.340, V.341
- Ligands: GOL.15
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.327, B:S.327, B:V.341
- Water bridges: B:N.340, B:V.341
GOL.18: 7 residues within 4Å:- Chain B: P.29, V.31, M.45, V.46, E.47, W.57, K.379
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.379, B:K.379
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Volbeda, A. et al., Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-29
- Peptides
- HYDROGENASE (NIFE) SMALL SUBUNIT HYDA: A
NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GLY: GLYCINE(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 1 x SOT: morpholine-4-sulfonic acid(Covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Volbeda, A. et al., Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-29
- Peptides
- HYDROGENASE (NIFE) SMALL SUBUNIT HYDA: A
NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
R