SMTL ID : 4us5.2 (1 other biounit)

Crystal Structure of apo-MsnO8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

13 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: E.11, A.13, S.24, H.27, S.28, R.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.28, A:R.322 NA.2: 5 residues within 4Å: Chain A: P.14, S.314, M.315, I.316, R.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.316, A:I.316 NA.3: 7 residues within 4Å: Chain A: L.81, L.82, S.83, G.110, R.111, A.112, L.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.83, A:S.83, A:A.112 Water bridges: A:S.83 NA.4: 5 residues within 4Å: Chain A: E.47, P.59, E.60, Y.85 Chain B: K.89 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.85, B:K.89 NA.5: 6 residues within 4Å: Chain A: H.98, D.103, R.104, I.105, G.165, P.166 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.98, A:D.103, A:I.105, A:I.105 Water bridges: A:R.74 NA.6: 6 residues within 4Å: Chain A: H.48, H.49, A.50, E.51, N.54 Chain B: S.159 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.51, A:E.51, B:S.159 NA.7: 7 residues within 4Å: Chain A: V.10, E.11, Q.12, V.313, S.314, R.322, Y.326 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.11, A:Q.12, A:Q.12, A:S.314, A:S.314, A:R.322 NA.13: 6 residues within 4Å: Chain B: E.11, A.13, S.24, H.27, S.28, R.322 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.24, B:R.322 NA.14: 5 residues within 4Å: Chain B: P.14, S.314, M.315, I.316, R.322 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.316, B:I.316 NA.15: 7 residues within 4Å: Chain B: L.81, L.82, S.83, G.110, R.111, A.112, L.137 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.83, B:G.110, B:A.112 Water bridges: B:S.83 NA.16: 5 residues within 4Å: Chain A: K.89 Chain B: E.47, P.59, E.60, Y.85 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.89, B:E.47 NA.17: 6 residues within 4Å: Chain A: S.159 Chain B: H.48, H.49, A.50, E.51, N.54 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.159, A:S.159, B:E.51 NA.18: 7 residues within 4Å: Chain B: V.10, E.11, Q.12, V.313, S.314, R.322, Y.326 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.12, B:Q.12, B:S.314, B:R.322

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: G.172, A.173, S.174, S.177 Ligand excluded by PLIP

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.9: 7 residues within 4Å: Chain A: R.42, R.74, D.103, D.106, A.167, W.169, R.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.106 Salt bridges: A:R.42, A:R.74, A:D.103, A:D.103, A:R.220 EPE.19: 7 residues within 4Å: Chain B: R.42, R.74, D.103, D.106, A.167, W.169, R.220 5 PLIP interactions: 5 interactions with chain B Salt bridges: B:R.42, B:R.74, B:D.103, B:D.103, B:R.220

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.10: 1 residues within 4Å: Chain A: D.135 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.135, A:D.135, A:R.183

3 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.11: 6 residues within 4Å: Chain A: R.111, A.173, S.174, V.175, S.176, F.198 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.175, A:F.198 Hydrogen bonds: A:V.175, A:S.176, A:S.176 Water bridges: A:N.113 P4G.12: 5 residues within 4Å: Chain A: L.100, Y.101, P.102, R.104 Chain B: R.65 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.101 Hydrogen bonds: A:R.104 P4G.20: 7 residues within 4Å: Chain A: R.65, E.69 Chain B: A.68, L.100, Y.101, P.102, R.104 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:R.104, A:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maier, S. et al., Insights Into the Bioactivity of Mensacarcin and Epoxide Formation by Msno8. Chembiochem (2014)

Release Date

2014-07-16

Peptides

LUCIFERASE-LIKE MONOOXYGENASE: A
LUCIFERASE-LIKE MONOOXYGENASE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

LUCIFERASE-LIKE MONOOXYGENASE

LUCIFERASE-LIKE MONOOXYGENASE

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