- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x 3PL: 3-PHENYLPROPANAL(Covalent)
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.4: 9 residues within 4Å:- Chain A: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.460, A:F.532, A:G.536, A:Q.539
BCT.5: 5 residues within 4Å:- Chain A: K.884, G.888, V.889, R.890, Y.892
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.553, A:K.884
BCT.16: 9 residues within 4Å:- Chain B: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.460, B:F.532, B:G.536, B:Q.539
BCT.17: 5 residues within 4Å:- Chain B: K.884, G.888, V.889, R.890, Y.892
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.892
- Water bridges: B:E.553, B:K.884
- 8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain A: E.899, E.903
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.899, A:E.903, H2O.52, H2O.52
MG.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.18: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.20: 2 residues within 4Å:- Chain B: E.899, E.903
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.899, B:E.903, H2O.104, H2O.104
MG.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 2 residues within 4Å:- Chain A: Y.892, R.893
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: Y.897, P.898, E.899
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain B: Y.892, R.893
Ligand excluded by PLIPCL.23: 3 residues within 4Å:- Chain B: Y.897, P.898, E.899
Ligand excluded by PLIP- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
PCD.12: 36 residues within 4Å:- Chain A: Q.99, C.139, I.390, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:Q.701, A:V.867
- Hydrogen bonds: A:Q.99, A:T.420, A:F.421, A:F.421, A:H.653, A:H.653, A:Q.655, A:G.656, A:S.695, A:G.697, A:R.699, A:Q.700, A:Q.701, A:Q.701, A:S.797, A:C.799, A:N.800, A:Q.807, A:V.867, A:G.868, A:E.869
- Water bridges: A:R.533
PCD.24: 36 residues within 4Å:- Chain B: Q.99, C.139, I.390, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:Q.701, B:V.867
- Hydrogen bonds: B:Q.99, B:T.420, B:F.421, B:F.421, B:H.653, B:Q.655, B:G.656, B:S.695, B:G.697, B:R.699, B:Q.700, B:Q.701, B:Q.701, B:S.797, B:C.799, B:N.800, B:Q.807, B:V.867, B:G.868
- Water bridges: B:R.533
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Correia, H.D. et al., Aromatic Aldehydes at the Active Site of Aldehyde Oxidoreductase from Desulfovibrio Gigas: Reactivity and Molecular Details of the Enzyme-Substrate and Enzyme-Product Interaction. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-08
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x 3PL: 3-PHENYLPROPANAL(Covalent)
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Correia, H.D. et al., Aromatic Aldehydes at the Active Site of Aldehyde Oxidoreductase from Desulfovibrio Gigas: Reactivity and Molecular Details of the Enzyme-Substrate and Enzyme-Product Interaction. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-08
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A