SMTL ID : 4usk.1 (1 other biounit)

Unravelling the B. pseudomallei heptokinase WcbL: from Structure to Drug Discovery.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.1: 8 residues within 4Å: Chain A: R.13, G.19, G.20, D.22, G.160, Q.162, D.163, I.217 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.217 Hydrogen bonds: A:R.13, A:G.20, A:Q.162, A:D.163 Water bridges: A:G.160, A:A.300 PGO.8: 8 residues within 4Å: Chain B: R.13, G.19, G.20, D.22, G.160, Q.162, D.163, I.217 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.217 Hydrogen bonds: B:R.13, B:G.20, B:Q.162, B:D.163 Water bridges: B:G.160, B:A.300

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: A.27, D.28, T.29, G.31, Y.178, A.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.179 DMS.9: 6 residues within 4Å: Chain B: A.27, D.28, T.29, G.31, Y.178, A.179 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.179

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: P.111, S.114, G.115, L.116, G.117, S.118 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.13, G.115, L.116, G.117 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: G.15, A.17, G.18, G.19, K.296 Ligands: CL.7 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: S.59, T.60, H.83, T.106, L.122 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: G.15, G.19, Q.162, S.298, G.299 Ligands: CL.5 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: P.111, S.114, G.115, L.116, G.117, S.118 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: R.13, G.115, L.116, G.117 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain B: G.15, A.17, G.18, G.19, K.296 Ligands: CL.14 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain B: S.59, T.60, H.83, T.106, L.122 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain B: G.15, G.19, Q.162, S.298, G.299 Ligands: CL.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vivoli, M. et al., Unraveling the B.Pseudomallei Heptokinase Wcbl: From Structure to Drug Discovery. Chem.Biol. (2015)

Release Date

2016-01-13

Peptides

PUTATIVE SUGAR KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

PUTATIVE SUGAR KINASE

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