SMTL ID : 4utb.2 (1 other biounit)

Crystal structure of dengue 2 virus envelope glycoprotein in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 A11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 4 residues within 4Å: Chain A: H.149, N.153, K.157, H.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.157

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: N.67, E.84, R.89, F.90, K.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.89, A:R.89

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain B: F.27, S.28, Y.29, S.30, N.74, N.77 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.29, B:S.30, B:S.30, B:N.77, B:N.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rouvinski, A. et al., Recognition Determinants of Broadly Neutralizing Human Antibodies Against Dengue Viruses. Nature (2015)

Release Date

2015-01-28

Peptides

ENVELOPE GLYCOPROTEIN E: A
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11: B
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

ENVELOPE GLYCOPROTEIN E

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11

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