SMTL ID : 4utg.1 (1 other biounit)

Burkholderia pseudomallei heptokinase WcbL,AMPPNP (ATP analogue) complex.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 18 residues within 4Å: Chain A: R.13, A.112, G.113, S.114, G.115, L.116, G.117, S.118, S.119, E.151, R.152, L.157, A.158, S.213, A.214, G.299, A.300 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:R.13, A:R.13, A:G.113, A:S.114, A:G.115, A:G.115, A:L.116, A:G.117, A:S.118, A:S.119, A:S.119, A:S.119, A:E.151, A:R.152, A:R.152, A:S.213, A:A.300 Water bridges: A:G.117, A:S.120, A:S.120, A:A.158, A:A.214 ANP.6: 18 residues within 4Å: Chain B: R.13, A.112, G.113, S.114, G.115, L.116, G.117, S.118, S.119, E.151, R.152, L.157, A.158, S.213, A.214, G.299, A.300 Ligands: MG.7 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:R.13, B:R.13, B:G.113, B:S.114, B:G.115, B:G.115, B:L.116, B:G.117, B:S.118, B:S.119, B:S.119, B:S.119, B:E.151, B:E.151, B:R.152, B:R.152, B:S.213, B:A.300 Water bridges: B:S.120, B:S.120, B:A.158, B:D.163, B:A.214

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: P.111, S.114, G.115, L.116, G.117, S.118 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.7: 7 residues within 4Å: Chain B: P.111, S.114, G.115, L.116, G.117, S.118 Ligands: ANP.6 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: A.17, G.18, G.19, K.296 Ligands: CL.4 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: G.15, G.19, Q.162, S.298, G.299 Ligands: CL.3 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: A.17, G.18, G.19, K.296 Ligands: CL.9 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain B: G.15, G.19, Q.162, S.298, G.299 Ligands: CL.8 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: Q.145, Y.148, R.161, Y.165, A.181, T.183 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.161, A:R.161, A:Y.165, A:Y.165, A:T.183 Water bridges: A:T.183 EDO.10: 6 residues within 4Å: Chain B: Q.145, Y.148, R.161, Y.165, A.181, T.183 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.161, B:R.161, B:Y.165, B:T.183 Water bridges: B:T.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vivoli, M. et al., Unraveling the B.Pseudomallei Heptokinase Wcbl: From Structure to Drug Discovery. Chem.Biol. (2015)

Release Date

2016-01-13

Peptides

SUGAR KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SUGAR KINASE

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