- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.23 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
- 8 x COU: COUMARIN(Non-covalent)
COU.2: 13 residues within 4Å:- Chain A: C.27, Y.29, A.59, I.68, P.114, H.180, H.183, F.185, W.304
- Chain B: W.360
- Ligands: FNR.1, COU.3, COU.4
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.68, A:F.185, A:W.304, B:W.360
- Salt bridges: A:H.180, A:H.183
COU.3: 8 residues within 4Å:- Chain A: W.280, W.304, G.305, R.328
- Chain B: W.360
- Ligands: FNR.1, COU.2, COU.4
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.280, A:W.304, B:W.360
- Salt bridges: A:R.328
- pi-Cation interactions: A:R.328
COU.4: 9 residues within 4Å:- Chain A: K.108, H.183, F.185, F.271, W.280, W.304
- Chain B: W.360
- Ligands: COU.2, COU.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:H.183, A:F.271
- Water bridges: A:K.108
- Salt bridges: A:K.108
- pi-Stacking: A:F.271
COU.5: 7 residues within 4Å:- Chain A: M.30, D.38, W.39
- Chain B: R.49, A.93, A.94, P.354
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:A.93, B:A.94, B:P.354
- pi-Stacking: A:W.39, A:W.39
COU.10: 13 residues within 4Å:- Chain A: W.360
- Chain B: C.27, Y.29, A.59, I.68, P.114, H.180, H.183, F.185, W.304
- Ligands: FNR.9, COU.11, COU.12
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.68, B:F.185, B:W.304, A:W.360
- Salt bridges: B:H.180, B:H.183
COU.11: 8 residues within 4Å:- Chain A: W.360
- Chain B: W.280, W.304, G.305, R.328
- Ligands: FNR.9, COU.10, COU.12
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.280, B:W.304, A:W.360
- Salt bridges: B:R.328
- pi-Cation interactions: B:R.328
COU.12: 9 residues within 4Å:- Chain A: W.360
- Chain B: K.108, H.183, F.185, F.271, W.280, W.304
- Ligands: COU.10, COU.11
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:H.183, B:F.271
- Water bridges: B:K.108
- Salt bridges: B:K.108
- pi-Stacking: B:F.271
COU.13: 7 residues within 4Å:- Chain A: R.49, A.93, A.94, P.354
- Chain B: M.30, D.38, W.39
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- pi-Stacking: B:W.39, B:W.39
- Hydrophobic interactions: A:A.93, A:A.94, A:P.354
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: P.70, R.113, R.127
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.113, A:R.127
SO4.7: 6 residues within 4Å:- Chain A: Y.338, V.346, K.348, A.349, S.350, E.362
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.348, A:A.349, A:S.350, A:S.350
- Water bridges: A:K.348, A:K.348
- Salt bridges: A:K.348
SO4.8: 3 residues within 4Å:- Chain A: D.207, R.211, R.256
6 PLIP interactions:6 interactions with chain A- Water bridges: A:D.207, A:D.207, A:R.256, A:R.256
- Salt bridges: A:R.211, A:R.256
SO4.14: 3 residues within 4Å:- Chain B: P.70, R.113, R.127
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.113, B:R.127
SO4.15: 6 residues within 4Å:- Chain B: Y.338, V.346, K.348, A.349, S.350, E.362
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:K.348, B:A.349, B:S.350, B:S.350
- Water bridges: B:K.348, B:K.348
- Salt bridges: B:K.348
SO4.16: 3 residues within 4Å:- Chain B: D.207, R.211, R.256
6 PLIP interactions:6 interactions with chain B- Water bridges: B:D.207, B:D.207, B:R.256, B:R.256
- Salt bridges: B:R.211, B:R.256
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Werther, T. et al., Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase. Nat Commun (2017)
- Release Date
- 2015-08-05
- Peptides
- XENOBIOTIC REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.23 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
- 8 x COU: COUMARIN(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Werther, T. et al., Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase. Nat Commun (2017)
- Release Date
- 2015-08-05
- Peptides
- XENOBIOTIC REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A