SMTL ID : 4utn.1 (1 other biounit)

Crystal structure of zebrafish Sirtuin 5 in complex with succinylated CPS1-peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x BEZ- GLY- VAL- LEU- SLL- GLU- TYR- GLY- VAL: SUCCINYL-CPS1-PEPTIDE(Non-covalent)

BEZ-GLY-VAL-LEU-SLL-GLU-TYR-GLY-VAL.1: 16 residues within 4Å: Chain A: R.44, A.59, Y.75, R.78, H.131, V.193, V.194, W.195, F.196, E.198, T.199, L.200, L.205, Y.228, A.231, M.232 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.193, A:V.194, A:L.205, A:Y.228, A:Y.228 Hydrogen bonds: A:R.44, A:Y.75, A:V.194, A:E.198, A:L.200, A:Y.228 Salt bridges: A:R.44, A:R.78 pi-Stacking: A:Y.228

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.139, C.142, C.180, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.180, A:C.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roessler, C. et al., Chemical Probing of the Human Sirtuin 5 Active Site Reveals its Substrate Acyl Specificity and Peptide-Based Inhibitors. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-08-20

Peptides

NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL

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