SMTL ID : 4uw8.2 (2 other biounits)

Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber with its intra-molecular chaperone domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-trimer

Ligands

3 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 12 residues within 4Å: Chain A: L.51, G.54, Y.55, G.56, R.58, H.68, S.69, A.72, H.74, R.104 Chain B: V.33, H.35 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.51, B:V.33 Hydrogen bonds: A:S.69, A:S.69, A:R.104, A:R.104 Salt bridges: A:R.58, A:H.68, A:H.68, A:H.74, A:R.104, A:R.104, B:H.35, B:H.35 FLC.2: 13 residues within 4Å: Chain B: L.51, G.54, Y.55, G.56, R.58, H.68, S.69, A.72, H.74, R.104 Chain C: V.33, F.34, H.35 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:L.51, C:V.33 Hydrogen bonds: B:G.54, B:R.58, B:S.69, B:S.69 Salt bridges: B:R.58, B:H.68, B:H.74, B:R.104, B:R.104, C:H.35 FLC.3: 13 residues within 4Å: Chain A: V.33, F.34, H.35 Chain C: L.51, G.54, Y.55, G.56, R.58, H.68, S.69, A.72, H.74, R.104 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.51, A:V.33 Hydrogen bonds: C:S.69, C:S.69, C:S.69, C:R.104, C:R.104 Salt bridges: C:R.58, C:H.68, C:H.68, C:R.104, A:H.35, A:H.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Doval, C. et al., Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone. Viruses (2015)

Release Date

2015-08-05

Peptides

L-SHAPED TAIL FIBER PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

L-SHAPED TAIL FIBER PROTEIN

Related Entries With Identical Sequence