SMTL ID : 4uwc.1 (1 other biounit)

Fibroblast growth factor receptor 1 kinase in complex with JK-P3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: E.75, M.79, A.184, D.185, F.186, G.187, L.188 Ligands: 4Y0.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.185, A:G.187, A:L.188 EDO.2: 5 residues within 4Å: Chain A: W.228, Y.245, R.262, M.263, W.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.263 Water bridges: A:K.209, A:W.228 EDO.3: 5 residues within 4Å: Chain A: A.159, H.223, T.290, F.291, K.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.291, A:K.292 Water bridges: A:H.223 EDO.4: 4 residues within 4Å: Chain A: R.14, W.15 Ligands: SO4.12, SO4.14 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: F.217, D.218, K.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.258 EDO.6: 7 residues within 4Å: Chain A: Y.116, L.139, D.143, S.146, Q.150, N.179, M.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.116, A:Q.150 EDO.7: 4 residues within 4Å: Chain A: K.209, P.246, G.247, V.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.247, A:V.248

1 x 4Y0: 3,4-dimethoxy-N-(5-phenyl-1H-pyrazol-3-yl)benzamide(Non-covalent)

4Y0.8: 17 residues within 4Å: Chain A: L.28, F.33, V.36, A.56, K.58, I.89, V.105, E.106, Y.107, A.108, S.109, K.110, G.111, E.115, L.174 Ligands: EDO.1, PPI.10 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.28, A:F.33, A:V.36, A:V.36, A:A.56, A:K.58, A:K.58, A:I.89, A:V.105, A:Y.107, A:L.174 Hydrogen bonds: A:E.106, A:A.108, A:A.108

2 x PPI: PROPANOIC ACID(Non-covalent)

PPI.9: 3 residues within 4Å: Chain A: R.121, G.242, S.243 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.205 Salt bridges: A:R.121 PPI.10: 4 residues within 4Å: Chain A: K.110, Y.116, R.120 Ligands: 4Y0.8 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.120

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 6 residues within 4Å: Chain A: R.114, R.171, T.201, N.203, R.205, W.210 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.171, A:T.202, A:R.205 Salt bridges: A:R.114, A:R.171, A:R.205 SO4.12: 8 residues within 4Å: Chain A: R.14, W.15, E.16, L.17, L.44, L.92, G.93 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) SO4.13: 2 residues within 4Å: Chain A: G.83, K.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.84 SO4.14: 2 residues within 4Å: Chain A: R.14 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.14 Salt bridges: A:R.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beeston, H.S. et al., Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase. Rapid Commun Mass Spectrom (2021)

Release Date

2015-09-02

Peptides

FIBROBLAST GROWTH FACTOR RECEPTOR 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FIBROBLAST GROWTH FACTOR RECEPTOR 1

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