SMTL ID : 4uyp.1

High resolution structure of the third cohesin ScaC in complex with the ScaB dockerin with a mutation in the N-terminal helix (IN to SI) from Acetivibrio cellulolyticus displaying a type I interaction.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

hetero-2-2-mer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.15, V.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.16 Water bridges: A:V.16 SO4.2: 2 residues within 4Å: Chain A: Q.43 Chain B: N.46 10 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:N.46, A:S.103, A:S.103 Water bridges: B:D.44, B:K.50, A:Q.43, A:S.101, A:S.101, C:E.128, C:E.128 SO4.3: 2 residues within 4Å: Chain A: Y.66, N.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.66, A:N.68 Water bridges: A:N.68 SO4.6: 1 residues within 4Å: Chain A: T.63 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Water bridges: A:T.64, D:K.28, D:K.28 SO4.9: 2 residues within 4Å: Chain B: K.64 Chain C: S.124 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain B Water bridges: C:S.124, C:G.125, B:K.64, B:K.64, B:K.64 Salt bridges: B:K.64 SO4.10: 2 residues within 4Å: Chain B: V.19, R.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.22 Water bridges: B:R.58 SO4.12: 6 residues within 4Å: Chain A: Y.134, N.135, D.136 Chain C: Y.134, N.135, D.136 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:Y.134, A:D.136, C:Y.134, C:D.136 Water bridges: C:T.114 SO4.13: 2 residues within 4Å: Chain C: Y.66, N.68 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.68 Water bridges: C:N.68, C:N.68, C:N.68 SO4.14: 2 residues within 4Å: Chain C: T.63, T.64 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.64 SO4.15: 3 residues within 4Å: Chain C: Q.43, K.44 Chain D: N.46 9 PLIP interactions: 6 interactions with chain C, 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: C:S.103, C:S.103, A:E.128, D:N.46 Water bridges: C:K.44, C:S.101, C:S.101, A:E.128 Salt bridges: C:K.44 SO4.16: 5 residues within 4Å: Chain C: Y.123, E.128, I.129, K.130, N.131 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.123, C:K.130, C:N.131, C:N.131 SO4.23: 3 residues within 4Å: Chain D: R.14, S.15, V.61 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.15 Water bridges: D:R.14, D:R.14, D:R.14, D:I.16 Salt bridges: D:R.14 SO4.24: 5 residues within 4Å: Chain D: E.35, Y.36, G.37, M.38, L.39 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:M.38, D:L.39 Water bridges: D:E.35, D:G.37

3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 4 residues within 4Å: Chain A: K.99, S.101, D.102, S.103 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.102, A:S.103 Water bridges: A:T.46, A:S.101, A:S.103, A:S.103, A:S.103 Salt bridges: A:D.102, A:D.102 EPE.11: 5 residues within 4Å: Chain B: E.35, Y.36, G.37, M.38, L.39 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.38, B:L.39 Water bridges: B:G.37 Salt bridges: B:E.35 EPE.17: 10 residues within 4Å: Chain A: N.39, N.115, Y.118 Chain B: N.30 Chain C: R.37, N.39, F.72, N.115, Y.118 Chain D: N.30 10 PLIP interactions: 1 interactions with chain D, 7 interactions with chain C, 2 interactions with chain A Water bridges: D:N.30, C:N.70, C:N.70, C:Y.118, C:Y.118, A:Y.118 Hydrogen bonds: C:N.39, C:N.115, A:N.115 Salt bridges: C:R.37

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 4 residues within 4Å: Chain A: S.124, G.125, T.126 Chain D: K.64 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.126 Hydrogen bonds: A:S.124 MPD.18: 4 residues within 4Å: Chain C: K.99, S.101, D.102, S.103 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:K.99 Hydrogen bonds: C:S.101, C:D.102, C:S.103 Water bridges: C:Q.43, C:S.101, C:S.101 MPD.19: 4 residues within 4Å: Chain C: A.52, I.56, E.57, A.59 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.52, C:I.56, C:A.59 Water bridges: C:A.59, C:A.59 MPD.20: 8 residues within 4Å: Chain A: E.69, N.70 Chain B: V.25, S.48, I.49, K.50 Chain C: A.117, Y.118 6 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: C:Y.118, C:Y.118 Hydrogen bonds: C:A.117, A:E.69 Water bridges: B:S.48, B:I.49 MPD.25: 9 residues within 4Å: Chain A: A.117, Y.118 Chain C: E.69, N.70 Chain D: Y.24, V.25, S.48, I.49, K.50 6 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D, 3 interactions with chain A Hydrogen bonds: C:E.69, A:A.117 Hydrophobic interactions: D:Y.24, A:Y.118, A:Y.118 Water bridges: D:I.49 MPD.26: 3 residues within 4Å: Chain D: S.15, V.19, R.22 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.22

4 x CA: CALCIUM ION(Non-covalent)

CA.7: 5 residues within 4Å: Chain B: D.42, D.44, N.46, S.48, D.53 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.42, B:D.44, B:S.48, B:D.53, H2O.12 CA.8: 5 residues within 4Å: Chain B: D.6, D.8, N.10, S.12, D.17 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.6, B:D.8, B:S.12, B:D.17, H2O.10 CA.21: 5 residues within 4Å: Chain D: D.42, D.44, N.46, S.48, D.53 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.42, D:S.48, D:D.53, D:D.53, H2O.24 CA.22: 5 residues within 4Å: Chain D: D.6, D.8, N.10, S.12, D.17 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.6, D:D.8, D:S.12, D:D.17, H2O.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cameron, K. et al., Cell-surface Attachment of Bacterial Multienzyme Complexes Involves Highly Dynamic Protein-Protein Anchors. J. Biol. Chem. (2015)

Release Date

2015-04-15

Peptides

Cellulosomal scaffoldin anchoring protein C: AC
Cellulosomal scaffoldin adaptor protein B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Cellulosomal scaffoldin anchoring protein C

Cellulosomal scaffoldin adaptor protein B

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