SMTL ID : 4uzf.1

R66E mutant of FAD synthetase from Corynebacterium ammoniagenes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-hexamer

Ligands

6 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.1: 8 residues within 4Å: Chain A: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:V.23, A:F.24, A:N.125, A:S.164 Water bridges: A:S.163, A:S.164, A:S.164, A:T.165, A:R.168 Salt bridges: A:H.28, A:H.31, A:H.31 PPV.3: 8 residues within 4Å: Chain B: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.23, B:F.24, B:N.125, B:S.164 Water bridges: B:D.25, B:S.164, B:R.168 Salt bridges: B:H.28, B:H.31, B:H.31 PPV.5: 8 residues within 4Å: Chain C: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:V.23, C:F.24, C:N.125, C:S.164 Water bridges: C:S.163, C:S.164, C:S.164, C:T.165, C:R.168 Salt bridges: C:H.28, C:H.31, C:H.31 PPV.7: 8 residues within 4Å: Chain D: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:V.23, D:F.24, D:N.125, D:S.164 Water bridges: D:D.25, D:S.164, D:R.168 Salt bridges: D:H.28, D:H.31, D:H.31 PPV.9: 8 residues within 4Å: Chain E: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:V.23, E:F.24, E:N.125, E:S.164 Water bridges: E:S.163, E:S.164, E:S.164, E:T.165, E:R.168 Salt bridges: E:H.28, E:H.31, E:H.31 PPV.11: 8 residues within 4Å: Chain F: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:V.23, F:F.24, F:N.125, F:S.164 Water bridges: F:D.25, F:S.164, F:R.168 Salt bridges: F:H.28, F:H.31, F:H.31

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.73, L.74 Chain B: R.195, Y.279 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.74 Salt bridges: B:R.195 SO4.4: 4 residues within 4Å: Chain A: Y.279 Chain B: T.73, L.74, T.216 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.279, B:L.74 SO4.6: 4 residues within 4Å: Chain C: T.73, L.74 Chain D: R.195, Y.279 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Salt bridges: D:R.195 Hydrogen bonds: C:L.74 SO4.8: 4 residues within 4Å: Chain C: Y.279 Chain D: T.73, L.74, T.216 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Y.279, C:Y.279, D:L.74 SO4.10: 4 residues within 4Å: Chain E: T.73, L.74 Chain F: R.195, Y.279 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:Y.279, E:L.74 Salt bridges: F:R.195 SO4.12: 4 residues within 4Å: Chain E: Y.279 Chain F: T.73, L.74, T.216 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:L.74, E:Y.279, E:Y.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serrano, A. et al., Quaternary Organization in a Bifunctional Prokaryotic Fad Synthetase: Involvement of an Arginine at its Adenylyltransferase Module on the Riboflavin Kinase Activity. Biochim.Biophys.Acta (2015)

Release Date

2015-04-08

Peptides

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF