SMTL ID : 4v0n.1 (3 other biounits)

Crystal structure of BBS1N in complex with ARL6DN, soaked with mercury

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 20 residues within 4Å: Chain A: D.15, N.16, S.17, G.18, K.19, T.20, T.21, P.38, T.39, M.59, S.60, G.61, N.117, K.118, D.120, L.121, N.150, G.151, L.152 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.16, A:S.17, A:G.18, A:K.19, A:T.20, A:T.20, A:T.21, A:T.21, A:T.21, A:T.39, A:T.39, A:S.60, A:G.61, A:N.117, A:K.118, A:K.118, A:G.151, A:L.152 Salt bridges: A:K.19, A:K.19, A:D.120

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.19, T.20, T.39, D.58, M.59 Ligands: GTP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.20, A:T.39, A:D.58

13 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 2 residues within 4Å: Chain A: H.100 Chain B: T.421 No protein-ligand interaction detected (PLIP) HG.4: 5 residues within 4Å: Chain B: L.303, A.305, Q.306, C.321 Ligands: HG.10 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.321 HG.5: 4 residues within 4Å: Chain B: T.217, C.218, A.265, M.266 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:A.265 HG.6: 4 residues within 4Å: Chain B: I.101, C.102, M.219, D.220 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.102 HG.7: 4 residues within 4Å: Chain B: P.56, C.57, V.99 Ligands: HG.11 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.57, B:V.99 HG.8: 3 residues within 4Å: Chain B: C.61, S.103 Ligands: HG.12 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.61 HG.9: 6 residues within 4Å: Chain B: C.234, L.247, N.248, P.249 Ligands: HG.13, HG.15 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.234, B:L.247 HG.10: 4 residues within 4Å: Chain B: G.286, L.303, P.307 Ligands: HG.4 No protein-ligand interaction detected (PLIP) HG.11: 4 residues within 4Å: Chain B: C.57, A.74, P.98 Ligands: HG.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.57, B:A.74, B:P.98 HG.12: 3 residues within 4Å: Chain B: C.61, N.62 Ligands: HG.8 No protein-ligand interaction detected (PLIP) HG.13: 6 residues within 4Å: Chain B: I.246, L.247, N.248, V.255 Ligands: HG.9, HG.15 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:L.247 HG.14: 5 residues within 4Å: Chain B: K.223, Q.224, C.234, L.273 Ligands: HG.15 No protein-ligand interaction detected (PLIP) HG.15: 5 residues within 4Å: Chain B: C.234, L.247 Ligands: HG.9, HG.13, HG.14 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mourao, A. et al., Structural Basis for Membrane Targeting of the Bbsome by Arl6. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-11-19

Peptides

ARF-LIKE SMALL GTPASE: A
BARDET-BIEDL SYNDROME 1 PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ARF-LIKE SMALL GTPASE

BARDET-BIEDL SYNDROME 1 PROTEIN

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