SMTL ID : 4v1y.2 (1 other biounit)

The structure of the hexameric atrazine chlorohydrolase, AtzA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.86, H.88, H.263, H.296, D.347, N.348 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.86, A:H.88, A:D.347 FE.3: 5 residues within 4Å: Chain B: H.86, H.88, H.263, H.296, D.347 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.86, B:H.88, B:H.296, B:D.347 FE.6: 5 residues within 4Å: Chain C: H.86, H.88, H.263, H.296, D.347 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.86, C:H.88, C:H.296, C:D.347 FE.8: 5 residues within 4Å: Chain D: H.86, H.88, H.263, H.296, D.347 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.86, D:H.88, D:H.263, D:H.296, D:D.347 FE.11: 5 residues within 4Å: Chain E: H.86, H.88, H.263, H.296, D.347 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.86, E:H.88, E:H.296, E:D.347 FE.13: 5 residues within 4Å: Chain F: H.86, H.88, H.263, H.296, D.347 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.86, F:H.88, F:H.296, F:D.347

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.280, K.303 Chain C: R.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.280, A:K.303 Water bridges: A:R.306 EDO.4: 2 residues within 4Å: Chain B: E.280, K.303 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Water bridges: F:D.106, F:D.106 Hydrogen bonds: B:K.303 EDO.9: 2 residues within 4Å: Chain D: E.280, K.303 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.280, D:K.303 Water bridges: D:R.306 EDO.10: 6 residues within 4Å: Chain A: R.302, E.334, R.338 Chain D: R.302, E.334, R.338 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.302, A:R.302, A:R.338, A:R.338, D:R.338 EDO.14: 3 residues within 4Å: Chain F: R.39, L.56, V.58 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.39, F:R.39 EDO.15: 6 residues within 4Å: Chain C: R.302, E.334, R.338 Chain F: R.302, E.334, R.338 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain F Hydrogen bonds: C:R.338, F:R.302, F:R.302, F:R.338, F:R.338

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain B: R.338 Chain E: E.334, R.338 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 8 residues within 4Å: Chain C: E.280, E.283, K.303, R.306, L.307, R.310 Chain E: R.194 Chain F: D.376 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:K.303, C:R.306, C:R.310, C:R.310, F:D.376 PEG.12: 7 residues within 4Å: Chain A: R.194 Chain B: D.376 Chain E: E.280, E.283, K.303, L.307, R.310 7 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: E:E.280, E:K.303, E:R.310, E:R.310, A:R.194, B:D.376, B:D.376 PEG.16: 8 residues within 4Å: Chain C: D.376 Chain D: L.191, R.194 Chain F: E.280, E.283, K.303, L.307, R.310 7 PLIP interactions: 5 interactions with chain F, 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: F:E.280, F:K.303, F:R.306, F:R.310, F:R.310, D:R.194, C:D.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peat, T.S. et al., The Structure of the Hexameric Atrazine Chlorohydrolase Atza. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-03-11

Peptides

ATRAZINE CHLOROHYDROLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

ATRAZINE CHLOROHYDROLASE

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