SMTL ID : 4v59.1

Crystal structure of fatty acid synthase complexed with nadp+ from thermomyces lanuginosus at 3.1 angstrom resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-6-6-mer

Ligands

12 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 24 residues within 4Å: Chain A: G.659, G.661, S.664, I.665, T.683, T.684, S.685, R.686, F.714, N.715, Q.716, P.745, F.746, A.747, A.748, P.800, L.801, Y.814, K.818, I.844, G.845, T.847, L.852, M.853 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.844 Hydrogen bonds: A:G.661, A:I.665, A:S.685, A:R.686, A:N.715, A:Q.716, A:F.746, A:A.748, A:A.748, A:K.818, A:T.847, A:L.852 Salt bridges: A:R.686 NAP.2: 26 residues within 4Å: Chain B: G.659, G.661, S.664, I.665, T.683, T.684, S.685, R.686, Y.695, F.714, N.715, Q.716, F.746, A.747, A.748, I.769, P.800, L.801, S.802, Y.814, K.818, I.844, G.845, T.847, L.852, M.853 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.844 Hydrogen bonds: B:G.661, B:I.665, B:S.685, B:S.685, B:R.686, B:Y.695, B:N.715, B:Q.716, B:F.746, B:A.748, B:K.818, B:T.847, B:L.852 Salt bridges: B:R.686 NAP.3: 23 residues within 4Å: Chain C: G.659, G.661, I.665, T.683, T.684, S.685, R.686, F.714, N.715, Q.716, F.746, A.747, A.748, I.769, P.800, L.801, S.802, Y.814, K.818, I.844, G.845, T.847, L.852 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.844 Hydrogen bonds: C:G.661, C:I.665, C:S.685, C:R.686, C:R.686, C:Y.695, C:N.715, C:Q.716, C:G.717, C:F.746, C:A.748, C:A.748, C:Y.814, C:K.818, C:T.847, C:L.852 Salt bridges: C:R.686 NAP.4: 24 residues within 4Å: Chain D: G.659, G.661, S.664, I.665, T.683, T.684, S.685, R.686, Y.695, F.714, N.715, Q.716, F.746, A.747, A.748, P.800, L.801, S.802, Y.814, K.818, I.844, G.845, T.847, L.852 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.844 Hydrogen bonds: D:G.661, D:I.665, D:S.685, D:S.685, D:R.686, D:R.686, D:Y.695, D:N.715, D:Q.716, D:F.746, D:A.748, D:A.748, D:Y.814, D:K.818, D:T.847, D:L.852 Salt bridges: D:R.686 NAP.5: 27 residues within 4Å: Chain E: G.659, G.661, S.664, I.665, T.683, T.684, S.685, R.686, F.714, N.715, Q.716, P.745, F.746, A.747, A.748, I.749, I.769, P.800, L.801, S.802, Y.814, K.818, I.844, G.845, T.847, L.852, M.853 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:I.844 Hydrogen bonds: E:G.661, E:I.665, E:S.685, E:S.685, E:R.686, E:R.686, E:Y.695, E:N.715, E:Q.716, E:F.746, E:A.748, E:Y.814, E:K.818, E:T.847, E:L.852 Salt bridges: E:R.686 NAP.6: 26 residues within 4Å: Chain F: G.659, G.661, S.664, I.665, T.683, T.684, S.685, R.686, Y.695, F.714, N.715, Q.716, F.746, A.747, A.748, I.769, P.800, L.801, S.802, Y.814, K.818, I.844, G.845, T.847, L.852, M.853 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:I.844 Hydrogen bonds: F:G.661, F:I.665, F:S.685, F:S.685, F:R.686, F:R.686, F:N.715, F:Q.716, F:F.746, F:A.748, F:K.818, F:T.847, F:L.852 Salt bridges: F:R.686 NAP.8: 18 residues within 4Å: Chain G: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.7 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:L.1049 Hydrogen bonds: G:K.622, G:N.648, G:H.733, G:E.845, G:D.1027 Salt bridges: G:R.650, G:K.1026 NAP.10: 20 residues within 4Å: Chain H: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, G.1006, Q.1007, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.9 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:L.1049 Hydrogen bonds: H:K.622, H:N.648, H:H.733, H:E.845, H:D.934, H:D.1027 Salt bridges: H:R.650, H:K.1026 NAP.12: 20 residues within 4Å: Chain I: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, G.1006, Q.1007, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.11 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:L.1049 Hydrogen bonds: I:K.622, I:N.648, I:H.733, I:E.845, I:D.934, I:D.1027 Salt bridges: I:R.650, I:K.1026 NAP.14: 20 residues within 4Å: Chain J: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, G.1006, Q.1007, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.13 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:L.1049 Hydrogen bonds: J:K.622, J:N.648, J:H.733, J:E.845, J:D.934, J:D.1027 Salt bridges: J:R.650, J:K.1026 NAP.16: 18 residues within 4Å: Chain K: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.15 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:L.1049 Hydrogen bonds: K:K.622, K:N.648, K:H.733, K:E.845, K:D.934, K:D.1027 Salt bridges: K:R.650, K:K.1026 NAP.18: 20 residues within 4Å: Chain L: T.591, G.615, Y.618, I.645, N.648, R.650, G.731, G.732, H.733, E.845, D.934, G.1006, Q.1007, K.1008, P.1009, K.1026, D.1027, L.1029, L.1049 Ligands: FMN.17 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:L.1049 Hydrogen bonds: L:K.622, L:N.648, L:H.733, L:E.845, L:D.934, L:D.1027 Salt bridges: L:R.650, L:K.1026

6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.7: 21 residues within 4Å: Chain G: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, G.1051, A.1054 Ligands: NAP.8 18 PLIP interactions: 18 interactions with chain G Hydrophobic interactions: G:M.590, G:P.592, G:L.1049, G:L.1049 Hydrogen bonds: G:G.589, G:T.591, G:N.643, G:N.643, G:A.676, G:K.699, G:K.699, G:T.726, G:G.731, G:G.763, G:G.795, G:S.796, G:R.797, G:G.1051 FMN.9: 21 residues within 4Å: Chain H: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, G.1051, A.1054 Ligands: NAP.10 16 PLIP interactions: 16 interactions with chain H Hydrophobic interactions: H:M.590, H:P.592, H:L.1049, H:L.1049 Hydrogen bonds: H:G.589, H:T.591, H:N.643, H:N.643, H:K.699, H:K.699, H:G.731, H:G.763, H:G.795, H:S.796, H:R.797, H:G.1051 FMN.11: 20 residues within 4Å: Chain I: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, A.1054 Ligands: NAP.12 16 PLIP interactions: 16 interactions with chain I Hydrophobic interactions: I:M.590, I:P.592, I:L.1049, I:L.1049 Hydrogen bonds: I:G.589, I:T.591, I:N.643, I:N.643, I:K.699, I:K.699, I:G.731, I:G.763, I:G.795, I:S.796, I:R.797, I:G.1051 FMN.13: 20 residues within 4Å: Chain J: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, A.1054 Ligands: NAP.14 17 PLIP interactions: 17 interactions with chain J Hydrophobic interactions: J:M.590, J:P.592, J:L.1049, J:L.1049 Hydrogen bonds: J:G.589, J:T.591, J:N.643, J:N.643, J:A.676, J:K.699, J:K.699, J:G.731, J:G.763, J:G.795, J:S.796, J:R.797, J:G.1051 FMN.15: 21 residues within 4Å: Chain K: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, G.1051, A.1054 Ligands: NAP.16 18 PLIP interactions: 18 interactions with chain K Hydrophobic interactions: K:M.590, K:P.592, K:L.1049, K:L.1049 Hydrogen bonds: K:G.589, K:T.591, K:N.643, K:N.643, K:A.676, K:K.699, K:K.699, K:T.726, K:G.731, K:G.763, K:G.795, K:S.796, K:R.797, K:G.1051 FMN.17: 21 residues within 4Å: Chain L: G.589, M.590, T.591, P.592, N.643, G.675, K.699, T.726, R.729, G.730, G.731, S.762, G.763, G.795, S.796, M.799, L.1049, Q.1050, G.1051, A.1054 Ligands: NAP.18 17 PLIP interactions: 17 interactions with chain L Hydrophobic interactions: L:M.590, L:P.592, L:L.1049, L:L.1049 Hydrogen bonds: L:G.589, L:T.591, L:N.643, L:N.643, L:K.699, L:K.699, L:T.726, L:G.731, L:G.763, L:G.795, L:S.796, L:R.797, L:G.1051

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenni, S. et al., Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling. Science (2007)

Release Date

2014-07-09

Peptides

FATTY ACID SYNTHASE ALPHA SUBUNITS: ABCDEF
FATTY ACID SYNTHASE BETA SUBUNITS: GHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

FATTY ACID SYNTHASE ALPHA SUBUNITS

FATTY ACID SYNTHASE BETA SUBUNITS

Related Entries With Identical Sequence