SMTL ID : 4v8s.1 (1 other biounit)

Archaeal RNAP-DNA binary complex at 4.32Ang

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.32 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain F: C.7, C.10, R.42, C.44, C.45 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.7, F:C.10, F:C.44, F:C.45 ZN.2: 6 residues within 4Å: Chain G: C.1064, C.1067, C.1082, I.1084, H.1085, S.1089 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.1064, G:C.1067, G:C.1082, G:H.1085 ZN.4: 6 residues within 4Å: Chain L: G.50, C.58, C.61, C.68, P.69, H.71 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.58, L:C.61, L:C.68, L:H.71 ZN.5: 6 residues within 4Å: Chain L: C.98, C.101, C.146, C.149, K.152, F.154 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.98, L:C.101, L:C.146, L:C.149 ZN.6: 4 residues within 4Å: Chain L: H.426, T.488, R.490 Chain N: E.80 3 PLIP interactions: 1 interactions with chain L, 2 interactions with chain N Metal complexes: L:H.426, N:E.80, N:E.80 ZN.8: 6 residues within 4Å: Chain M: C.9, W.10, T.12, C.26, Y.28, C.29 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.9, M:T.12, M:C.26, M:C.29

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 14 residues within 4Å: Chain H: C.183, P.184, E.185, V.187, F.188, A.202, C.203, T.204, L.205, C.206, E.207, E.208, C.209, I.219 3 PLIP interactions: 3 interactions with chain H, Metal complexes: H:C.203, H:C.206, H:C.209

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain L: D.456, D.458, D.460 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:D.456, L:D.456, L:D.458, L:D.458, L:D.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojtas, M.N. et al., Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res. (2012)

Release Date

2014-07-09

Peptides

DNA-DIRECTED RNA POLYMERASE SUBUNIT K: C
RNA POLYMERASE SUBUNIT 13: D
DNA-DIRECTED RNA POLYMERASE SUBUNIT L: E
DNA-DIRECTED RNA POLYMERASE SUBUNIT N: F
DNA-DIRECTED RNA POLYMERASE: G
DNA-DIRECTED RNA POLYMERASE SUBUNIT D: H
RNA POLYMERASE SUBUNIT 7: I
RNA POLYMERASE SUBUNIT 4: J
RNA POLYMERASE SUBUNIT 8: K
DNA-DIRECTED RNA POLYMERASE: L
DNA-DIRECTED RNA POLYMERASE SUBUNIT P: M
DNA-DIRECTED RNA POLYMERASE SUBUNIT A'': N
DNA-DIRECTED RNA POLYMERASE SUBUNIT H: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
AI

D
AJ

E
AM

F
AO

G
AR

H
AS

I
AT

J
AU

K
AV

L
AW

M
AX

N
AY

O
AZ

DNA-DIRECTED RNA POLYMERASE SUBUNIT K

RNA POLYMERASE SUBUNIT 13

DNA-DIRECTED RNA POLYMERASE SUBUNIT L

DNA-DIRECTED RNA POLYMERASE SUBUNIT N

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE SUBUNIT D

RNA POLYMERASE SUBUNIT 7

RNA POLYMERASE SUBUNIT 4

RNA POLYMERASE SUBUNIT 8

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE SUBUNIT P

DNA-DIRECTED RNA POLYMERASE SUBUNIT A''

DNA-DIRECTED RNA POLYMERASE SUBUNIT H

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