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SMTL ID : 4vhb.1
THIOCYANATE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
SCN
:
THIOCYANATE ION
(Non-functional Binders)
SCN.1:
5 residues within 4Å:
Chain A:
F.28
,
F.43
,
L.57
,
H.85
Ligands:
HEM.2
1
PLIP interactions
:
1 interactions with chain A
Water bridges:
A:Y.29
SCN.3:
4 residues within 4Å:
Chain B:
F.28
,
F.43
,
L.57
Ligands:
HEM.4
1
PLIP interactions
:
1 interactions with chain B
Water bridges:
B:Y.29
2 x
HEM
:
PROTOPORPHYRIN IX CONTAINING FE
(Non-covalent)
HEM.2:
16 residues within 4Å:
Chain A:
L.42
,
F.43
,
L.57
,
T.60
,
V.61
,
I.81
,
K.84
,
H.85
,
A.88
,
V.90
,
H.94
,
Y.95
,
V.98
,
I.129
,
F.133
Ligands:
SCN.1
20
PLIP interactions
:
20 interactions with chain A
,
Hydrophobic interactions:
A:L.42
,
A:F.43
,
A:F.43
,
A:F.43
,
A:L.57
,
A:T.60
,
A:V.61
,
A:I.81
,
A:A.88
,
A:V.90
,
A:Y.95
,
A:Y.95
,
A:V.98
,
A:I.129
,
A:F.133
,
A:F.133
Hydrogen bonds:
A:F.43
Salt bridges:
A:K.80
,
A:K.84
Metal complexes:
A:H.85
HEM.4:
16 residues within 4Å:
Chain B:
L.42
,
F.43
,
L.57
,
T.60
,
V.61
,
I.81
,
K.84
,
H.85
,
A.88
,
V.90
,
H.94
,
Y.95
,
V.98
,
I.129
,
F.133
Ligands:
SCN.3
17
PLIP interactions
:
17 interactions with chain B
,
Hydrophobic interactions:
B:L.42
,
B:F.43
,
B:F.43
,
B:F.43
,
B:L.57
,
B:T.60
,
B:V.61
,
B:I.81
,
B:A.88
,
B:V.90
,
B:V.90
,
B:Y.95
,
B:V.98
,
B:I.129
,
B:F.133
,
B:F.133
Metal complexes:
B:H.85
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bolognesi, M. et al., Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study. J.Mol.Biol. (1999)
Release Date
1999-08-31
Peptides
PROTEIN (HEMOGLOBIN):
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Clustal Format
PNG Image
Secondary Structure
None
DSSP
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Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
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PROTEIN (HEMOGLOBIN)
Related Entries With Identical Sequence
1vhb.1
|
2vhb.1
|
3tm3.1
|
3vhb.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme