SMTL ID : 4w1t.1

Structure of the Ssl1 laccase mutant H99Y with depleted type-2 copper ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-trimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.100, R.111 Chain B: G.243 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.243, A:R.111, A:R.111 Water bridges: A:R.98 GOL.7: 6 residues within 4Å: Chain B: R.14, I.16, L.43, I.44, E.45, L.46 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.14, B:E.45, B:E.45 Water bridges: B:E.45 GOL.8: 9 residues within 4Å: Chain B: G.116, Y.117, W.118, N.208, R.209, S.233 Chain C: Q.221, V.222, V.223 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:Q.221, B:Y.117 Water bridges: C:V.222, C:V.222, C:D.224, B:R.209, B:S.233, B:S.233 GOL.9: 9 residues within 4Å: Chain B: A.115, G.116, Y.117, I.143, V.144, R.145, D.149, R.209, T.210 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.116, B:Y.117, B:R.145, B:D.149, B:R.209, B:T.210 GOL.13: 9 residues within 4Å: Chain C: A.115, G.116, Y.117, I.143, V.144, R.145, D.149, R.209, T.210 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.116, C:R.145, C:R.209, C:T.210

9 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.196, A:C.253, A:H.258 CU.3: 3 residues within 4Å: Chain A: H.201, H.252 Chain C: H.123 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.123, A:H.201, A:H.252, H2O.5, H2O.33 CU.4: 6 residues within 4Å: Chain A: Y.67, H.69, H.119, H.121, A.231 Chain B: H.254 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.69, A:H.121, B:H.254 CU.5: 3 residues within 4Å: Chain A: H.123 Chain B: H.201, H.252 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.201, B:H.252, A:H.123, H2O.9, H2O.16 CU.6: 6 residues within 4Å: Chain A: H.254 Chain C: Y.67, H.69, H.119, H.121, A.231 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.254, C:H.69, C:H.121 CU.10: 4 residues within 4Å: Chain B: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.196, B:C.253, B:H.258 CU.11: 5 residues within 4Å: Chain B: Y.67, H.69, H.121, A.231 Chain C: H.254 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.69, B:H.121, C:H.254 CU.12: 3 residues within 4Å: Chain B: H.123 Chain C: H.201, H.252 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:H.201, C:H.252, B:H.123, H2O.16, H2O.27 CU.14: 4 residues within 4Å: Chain C: H.196, C.253, H.258, M.263 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.196, C:C.253, C:H.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunne, M. et al., Structure of the Ssl1 laccase mutant H99Y with depleted type-2 copper ion. To Be Published

Release Date

2015-08-26

Peptides

Copper oxidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Copper oxidase