SMTL ID : 4w6y.1

Co-complex structure of the lectin domain of F18 fimbrial adhesin FedF with inhibitory nanobody NbFedF9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

hetero-2-2-mer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.64, Y.65, A.66 Chain D: R.54 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:A.66 Salt bridges: D:R.54 SO4.2: 4 residues within 4Å: Chain A: S.44 Chain C: T.46, T.48, S.132 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:T.46, C:T.48, C:S.132, A:S.44 Water bridges: C:T.48, C:T.134, C:T.134, A:S.44, A:S.44 SO4.3: 4 residues within 4Å: Chain B: R.72, D.73, N.74, A.75 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.72, B:N.74, B:N.74, B:A.75 SO4.4: 5 residues within 4Å: Chain A: Q.31 Chain B: Y.59, R.108, V.111, R.112 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.31 Water bridges: B:D.62, B:V.111 Salt bridges: B:R.108, B:R.112 SO4.5: 4 residues within 4Å: Chain B: R.54 Chain C: Q.64, Y.65, A.66 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Salt bridges: B:R.54 Hydrogen bonds: C:A.66 SO4.6: 4 residues within 4Å: Chain A: T.46, T.48, S.132 Chain C: S.44 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:T.46, A:T.48, A:T.48, A:S.132, C:S.44 Water bridges: C:S.44, C:S.44 SO4.7: 4 residues within 4Å: Chain D: R.72, D.73, N.74, A.75 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.72, D:D.73, D:N.74, D:N.74, D:A.75 SO4.8: 5 residues within 4Å: Chain C: Q.31 Chain D: Y.59, R.108, V.111, R.112 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:Q.31, D:Y.59 Water bridges: D:D.62, D:V.111 Salt bridges: D:R.108, D:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moonens, K. et al., Nanobody Mediated Inhibition of Attachment of F18 Fimbriae Expressing Escherichia coli. Plos One (2014)

Release Date

2014-12-17

Peptides

F18 fimbrial adhesin AC: AC
Nanobody NbFedF9: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

F18 fimbrial adhesin AC

Nanobody NbFedF9

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