SMTL ID : 4w7j.1 (3 other biounits)

CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) FROM AURICULARIA AURICULA-JUDAE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: E.163, F.165, F.167, L.168, D.169, G.170, I.171, A.172, L.220, Q.222, V.254, R.256, H.305, I.306, T.309, R.310, R.312, I.331, R.333, L.358, F.360, F.371, L.374, Q.375, I.398, I.399, V.427 39 PLIP interactions: 38 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.165, A:F.167, A:A.172, A:L.220, A:L.220, A:Q.222, A:V.254, A:I.306, A:T.309, A:R.310, A:I.331, A:L.358, A:L.358, A:F.360, A:F.360, A:F.360, A:F.371, A:L.374, A:L.374, A:I.398, A:I.399, A:V.427 Hydrogen bonds: A:D.169, A:G.170, A:I.171, A:A.172 Water bridges: A:A.172, A:R.256, A:R.310, A:R.310, A:R.312, A:R.312 Salt bridges: A:R.256, A:R.310, A:R.312, A:R.333 pi-Cation interactions: A:R.333 Metal complexes: A:H.305, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Linde, D. et al., Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study. Biochem.J. (2015)

Release Date

2015-03-11

Peptides

Dye-decolorizing peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dye-decolorizing peroxidase

Related Entries With Identical Sequence