SMTL ID : 4w99.1

Apo-structure of the Y79F,W322E-double mutant of Etr1p

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.182, A.331, K.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.182, A:K.332 Water bridges: A:K.332 GOL.6: 9 residues within 4Å: Chain A: Y.161, G.298, F.299, E.300, E.303, L.304 Chain B: Y.289, I.290, N.293 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.161, A:Y.161, A:E.300, B:Y.289, B:N.293 Water bridges: B:I.290 GOL.7: 5 residues within 4Å: Chain B: T.10, Q.22, T.69, T.70, E.71 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.70, B:E.71, B:E.71

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: G.175, G.176, T.177, S.178, V.198, I.199, R.200, R.202, M.277 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.175, A:G.176, A:T.177, A:S.178, A:R.200 Water bridges: A:R.200, A:R.200, A:R.200 Salt bridges: A:R.200, A:R.202 SO4.3: 3 residues within 4Å: Chain A: R.263, P.285, S.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.287, A:S.287 Salt bridges: A:R.263 SO4.4: 2 residues within 4Å: Chain A: T.259, R.263 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.259, A:R.263 Salt bridges: A:R.229, A:R.263 SO4.5: 2 residues within 4Å: Chain A: E.95, Q.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.129 Water bridges: A:E.95 Salt bridges: A:K.123 SO4.8: 8 residues within 4Å: Chain B: G.175, G.176, T.177, S.178, V.198, I.199, R.200, R.202 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.175, B:G.176, B:T.177, B:T.177, B:S.178, B:R.200 Water bridges: B:T.177, B:T.177, B:R.200 Salt bridges: B:R.200, B:R.202 SO4.9: 3 residues within 4Å: Chain B: Q.11, H.12, K.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.12 Salt bridges: B:H.12, B:K.63 SO4.10: 3 residues within 4Å: Chain B: R.263, P.285, S.287 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.287 Salt bridges: B:R.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenthal, R.G. et al., The use of ene adducts to study and engineer enoyl-thioester reductases. Nat.Chem.Biol. (2015)

Release Date

2015-03-18

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial