SMTL ID : 4wa1.1 (1 other biounit)

The crystal structure of hemagglutinin from a H3N8 influenza virus isolated from New England harbor seals

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.31, T.33, T.311, L.374 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: N.158, I.235, M.237 Chain C: S.212, P.214, L.215 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.235 Hydrogen bonds: C:L.215 NAG-NAG.4: 7 residues within 4Å: Chain A: S.212, R.213, P.214, L.215 Chain B: N.158, T.160, M.237 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.215 NAG-NAG.7: 6 residues within 4Å: Chain B: S.212, P.214, L.215 Chain C: N.158, T.160, M.237 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.215

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 4 residues within 4Å: Chain B: N.31, T.33, T.311, L.374 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: S.38, N.278, V.290, N.291 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.278, A:V.290, A:N.291 Water bridges: A:V.290 NAG.6: 4 residues within 4Å: Chain B: S.38, N.278, V.290, N.291 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.278, B:V.290, B:N.291 Water bridges: B:V.290 NAG.8: 3 residues within 4Å: Chain C: N.31, T.311, L.374 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.31, C:T.311 NAG.9: 5 residues within 4Å: Chain C: S.38, N.278, V.290, N.291, E.391 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.278, C:V.290, C:N.291 Water bridges: C:V.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural and Functional Analysis of Surface Proteins from an A(H3N8) Influenza Virus Isolated from New England Harbor Seals. J.Virol. (2015)

Release Date

2015-01-14

Peptides

Hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
A

Hemagglutinin

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