- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
ZMR.2: 17 residues within 4Å:- Chain A: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:W.97, A:I.141
- Hydrogen bonds: A:R.70, A:R.74, A:W.97, A:W.97, A:R.143, A:E.196, A:R.211, A:Y.264
- Water bridges: A:E.196
- Salt bridges: A:R.36, A:E.37, A:E.146, A:R.211, A:R.288
ZMR.5: 17 residues within 4Å:- Chain B: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:W.97, B:I.141
- Hydrogen bonds: B:R.70, B:R.74, B:W.97, B:W.97, B:R.143, B:E.196, B:R.211, B:Y.264
- Water bridges: B:E.196
- Salt bridges: B:R.36, B:E.37, B:E.146, B:R.211, B:R.288
ZMR.8: 17 residues within 4Å:- Chain C: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:W.97, C:I.141
- Hydrogen bonds: C:R.70, C:R.74, C:W.97, C:W.97, C:R.143, C:E.196, C:R.211, C:Y.264
- Water bridges: C:E.196
- Salt bridges: C:R.36, C:E.37, C:E.146, C:R.211, C:R.288
ZMR.11: 17 residues within 4Å:- Chain D: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:W.97, D:I.141
- Hydrogen bonds: D:R.70, D:R.74, D:W.97, D:W.97, D:R.143, D:E.196, D:R.211, D:Y.264
- Water bridges: D:E.196
- Salt bridges: D:R.36, D:E.37, D:E.146, D:R.211, D:R.288
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.212, G.216, D.242, G.263, Y.264
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.212, A:G.216, A:D.242, A:Y.264
CA.6: 5 residues within 4Å:- Chain B: D.212, G.216, D.242, G.263, Y.264
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.212, B:G.216, B:D.242, B:Y.264
CA.9: 5 residues within 4Å:- Chain C: D.212, G.216, D.242, G.263, Y.264
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.212, C:G.216, C:D.242, C:Y.264
CA.12: 5 residues within 4Å:- Chain D: D.212, G.216, D.242, G.263, Y.264
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.212, D:G.216, D:D.242, D:Y.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H. et al., Structural and Functional Analysis of Surface Proteins from an A(H3N8) Influenza Virus Isolated from New England Harbor Seals. J.Virol. (2015)
- Release Date
- 2015-01-14
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H. et al., Structural and Functional Analysis of Surface Proteins from an A(H3N8) Influenza Virus Isolated from New England Harbor Seals. J.Virol. (2015)
- Release Date
- 2015-01-14
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A