SMTL ID : 4wad.1

Crystal Structure of TarM with UDP-GlcNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 22 residues within 4Å: Chain A: K.20, G.21, G.22, M.23, S.25, H.254, V.255, L.287, N.309, I.329, S.330, R.331, K.336, G.361, Y.387, T.388, Y.407, E.408, G.409, L.412, S.413, E.416 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.329, A:L.412 Hydrogen bonds: A:G.22, A:M.23, A:S.25, A:H.254, A:Y.387, A:T.388, A:T.388, A:G.409, A:Q.410 Salt bridges: A:R.331, A:K.336 UD1.6: 22 residues within 4Å: Chain B: K.20, G.21, G.22, M.23, S.25, H.254, V.255, L.287, N.309, I.329, S.330, R.331, K.336, G.361, Y.387, T.388, Y.407, E.408, G.409, L.412, S.413, E.416 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.329, B:L.412 Hydrogen bonds: B:G.22, B:M.23, B:S.25, B:H.254, B:Y.387, B:T.388, B:T.388, B:G.409, B:Q.410 Salt bridges: B:R.331, B:K.336 UD1.11: 22 residues within 4Å: Chain C: K.20, G.21, G.22, M.23, S.25, H.254, V.255, L.287, N.309, I.329, S.330, R.331, K.336, G.361, Y.387, T.388, Y.407, E.408, G.409, L.412, S.413, E.416 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:I.329, C:L.412 Hydrogen bonds: C:G.22, C:M.23, C:S.25, C:H.254, C:Y.387, C:T.388, C:T.388, C:G.409, C:Q.410 Salt bridges: C:R.331, C:K.336

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Y.127, D.138, N.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.138, A:N.166 EDO.3: 2 residues within 4Å: Chain A: H.86, P.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.180 EDO.7: 3 residues within 4Å: Chain B: Y.127, D.138, N.166 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.138, B:N.166 EDO.8: 2 residues within 4Å: Chain B: H.86, P.180 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.180 EDO.12: 3 residues within 4Å: Chain C: Y.127, D.138, N.166 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.138, C:N.166 EDO.13: 2 residues within 4Å: Chain C: H.86, P.180 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.180

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: Y.72 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: F.87 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: Y.72 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: F.87 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: Y.72 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: F.87 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koc, C. et al., Structural and Enzymatic Analysis of TarM Glycosyltransferase from Staphylococcus aureus Reveals an Oligomeric Protein Specific for the Glycosylation of Wall Teichoic Acid. J.Biol.Chem. (2015)

Release Date

2015-02-25

Peptides

Glycosyl transferase, group 1 family protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Glycosyl transferase, group 1 family protein

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