SMTL ID : 4wb3.2 (2 other biounits)

Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a-desArg complement anaphylatoxin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: P.50, R.54 No protein-ligand interaction detected (PLIP) ACT.2: 3 residues within 4Å: Chain A: D.29, V.46, F.56 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.29, A:V.46, A:F.56 Hydrogen bonds: A:D.29 Salt bridges: A:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yatime, L. et al., Structural basis for the targeting of complement anaphylatoxin C5a using a mixed L-RNA/L-DNA aptamer. Nat Commun (2015)

Release Date

2015-05-06

Peptides

Complement C5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Complement C5

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