SMTL ID : 4wby.1

tRNA-processing enzyme (apo form I)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: G.312, K.315 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.315, A:K.315 Salt bridges: A:K.315 SO4.2: 2 residues within 4Å: Chain A: R.1, L.144 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.1, A:L.144, A:R.145 Salt bridges: A:R.1 SO4.3: 4 residues within 4Å: Chain A: R.35, R.172, F.173, R.176 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.35, A:R.35, A:R.35, A:R.169, A:R.169 Salt bridges: A:R.35, A:R.172, A:R.176 SO4.4: 1 residues within 4Å: Chain A: R.301 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.298, A:S.298, A:R.301, A:E.302 Salt bridges: A:R.301 SO4.5: 2 residues within 4Å: Chain A: P.6, E.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.7 Water bridges: A:N.8

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: R.153, S.182, R.183, S.184 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.153, A:R.153, A:S.182, A:S.184, A:S.184 Water bridges: A:S.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, S. et al., Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure (2015)

Release Date

2015-04-15

Peptides

Poly A polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly A polymerase