SMTL ID : 4wcw.1 (1 other biounit)

Ribosomal silencing factor during starvation or stationary phase (RsfS) from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: I.37, D.39 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.39, H2O.1, H2O.1, H2O.1, H2O.1 MG.2: 3 residues within 4Å: Chain B: V.36, I.37, D.39 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.39, H2O.5, H2O.6, H2O.6, H2O.7 MG.3: 1 residues within 4Å: Chain B: D.57 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.57, H2O.5, H2O.5

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: I.37, R.87 Chain B: A.71, R.72, R.73 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.71, B:R.73 Water bridges: B:A.71 Hydrophobic interactions: A:I.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structure of Ribosomal Silencing Factor Bound to Mycobacterium tuberculosis Ribosome. Structure (2015)

Release Date

2014-09-24

Peptides

Ribosomal silencing factor RsfS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribosomal silencing factor RsfS

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