SMTL ID : 4we6.2 (1 other biounit)

The crystal structure of hemagglutinin HA1 domain from influenza virus A/Perth/142/2007(H3N2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.91, T.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91, A:T.93 NAG.2: 2 residues within 4Å: Chain A: N.98, R.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.98, A:R.220 Water bridges: A:R.220, A:R.220, A:R.220

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: G.99, T.100, W.118, T.120, L.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.100, A:T.100 Water bridges: A:T.120 GOL.4: 9 residues within 4Å: Chain A: N.98, T.100, R.106, S.111, F.112, F.113, S.114, L.116, R.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.98, A:F.113, A:R.220, A:R.220 Water bridges: A:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor binding preferences of recombinant human A(H3N2) virus hemagglutinins. Virology (2015)

Release Date

2015-02-11

Peptides

Hemagglutinin HA1 chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hemagglutinin HA1 chain

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