SMTL ID : 4wer.1

Crystal structure of diacylglycerol kinase catalytic domain protein from Enterococcus faecalis V583

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: N.12, P.13, S.14, S.15, T.43, E.44, K.45, G.46, G.69, D.70, G.71, T.72 Ligands: EDO.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.12, A:S.14, A:S.15, A:T.43, A:T.43, A:G.69, A:G.69, A:G.71, A:T.72 AMP.3: 13 residues within 4Å: Chain B: N.12, P.13, S.14, S.15, T.43, E.44, K.45, G.46, G.69, D.70, G.71, T.72 Ligands: EDO.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.12, B:S.14, B:S.15, B:T.43, B:T.43, B:G.69, B:G.69, B:G.71, B:T.72

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.45, G.46 Ligands: AMP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.46 EDO.4: 3 residues within 4Å: Chain B: K.45, G.46 Ligands: AMP.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of diacylglycerol kinase catalytic domain protein from Enterococcus faecalis V583. To Be Published

Release Date

2014-09-24

Peptides

Diacylglycerol kinase catalytic domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Diacylglycerol kinase catalytic domain protein