SMTL ID : 4wgx.2 (1 other biounit)

Crystal Structure of Molinate Hydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 13 residues within 4Å: Chain A: H.68, G.72, I.73, M.76, T.113, W.114, L.143, M.146, F.154, K.209, H.215, H.251, D.342 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.73, A:L.143, A:F.154 Hydrogen bonds: A:K.209 Water bridges: A:H.215 MPD.3: 16 residues within 4Å: Chain B: H.68, G.72, I.73, M.76, T.113, W.114, L.143, M.146, F.154, K.209, H.215, H.251, H.271, Q.298, F.318, D.342 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.73 Hydrogen bonds: B:K.209 MPD.5: 13 residues within 4Å: Chain C: H.68, G.72, I.73, M.76, T.113, W.114, L.143, M.146, F.154, K.209, H.215, H.251, D.342 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.73, C:L.143, C:F.154 Hydrogen bonds: C:K.209 Water bridges: C:H.215 MPD.7: 16 residues within 4Å: Chain D: H.68, G.72, I.73, M.76, T.113, W.114, L.143, M.146, F.154, K.209, H.215, H.251, H.271, Q.298, F.318, D.342 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.73 Hydrogen bonds: D:K.209

4 x CO: COBALT (II) ION(Non-covalent)

CO.2: 2 residues within 4Å: Chain A: H.360, E.361 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.360, H2O.4, H2O.6, H2O.6, H2O.6 CO.4: 2 residues within 4Å: Chain B: H.360, E.361 No protein-ligand interaction detected (PLIP) CO.6: 2 residues within 4Å: Chain C: H.360, E.361 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:H.360, H2O.14, H2O.16, H2O.16, H2O.17 CO.8: 2 residues within 4Å: Chain D: H.360, E.361 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugrue, E. et al., Evolutionary Expansion of the Amidohydrolase Superfamily in Bacteria in Response to the Synthetic Compounds Molinate and Diuron. Appl.Environ.Microbiol. (2015)

Release Date

2015-02-11

Peptides

Molinate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

Molinate hydrolase

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