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SMTL ID : 4wgz.1
Crystal Structure of Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015 at pH 6.0
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.11 Å
Oligo State
homo-dimer
Ligands
2 x
HEC
:
HEME C
(Covalent)
HEC.1:
21 residues within 4Å:
Chain A:
R.12
,
Q.13
,
L.16
,
T.17
,
A.20
,
W.56
,
F.59
,
G.65
,
G.66
,
D.67
,
A.68
,
I.72
,
F.79
,
K.82
,
Q.83
,
F.86
,
C.116
,
C.119
,
H.120
,
Y.123
,
R.124
19
PLIP interactions
:
17 interactions with chain A
,
2 interactions with chain B
,
Hydrophobic interactions:
A:L.16
,
A:W.56
,
A:W.56
,
A:F.59
,
A:I.72
,
A:F.79
,
A:Q.83
,
A:F.86
,
A:F.86
,
A:R.124
Hydrogen bonds:
A:Q.13
,
A:T.17
,
A:D.67
,
A:A.68
Salt bridges:
A:R.12
,
B:K.10
pi-Cation interactions:
A:R.124
Metal complexes:
A:H.120
Water bridges:
B:K.10
HEC.2:
21 residues within 4Å:
Chain B:
R.12
,
Q.13
,
L.16
,
T.17
,
A.20
,
W.56
,
F.59
,
G.65
,
G.66
,
D.67
,
A.68
,
I.72
,
F.79
,
K.82
,
Q.83
,
F.86
,
C.116
,
C.119
,
H.120
,
Y.123
,
R.124
19
PLIP interactions
:
17 interactions with chain B
,
2 interactions with chain A
,
Hydrophobic interactions:
B:L.16
,
B:W.56
,
B:W.56
,
B:F.59
,
B:I.72
,
B:F.79
,
B:Q.83
,
B:F.86
,
B:F.86
,
B:R.124
Hydrogen bonds:
B:Q.13
,
B:D.67
,
B:A.68
Water bridges:
B:T.17
,
A:K.10
Salt bridges:
B:R.12
,
A:K.10
pi-Cation interactions:
B:R.124
Metal complexes:
B:H.120
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Takashina, A. et al., X-ray Crystallographic Elucidation for the Alkaline High-spin State Transition of Iron(III) Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015. CHEM LETT. (2015)
Release Date
2015-03-18
Peptides
Cytochrome c':
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Cytochrome c'
Toggle Identical (AB)
Related Entries With Identical Sequence
1e83.1
|
1e84.1
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1e85.1
|
1e86.1
|
2xlm.1
|
2yld.1
|
2yli.1
|
3zwi.1
|
4cda.1
|
4cdv.1
|
4cdy.1
|
4cip.1
|
4cjg.1
|
4cjo.1
|
4wgy.1
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