SMTL ID : 4whg.2 (2 other biounits)

Crystal Structure of TR3 LBD in complex with Molecule 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: H.23, S.26, G.27, P.28, R.101, R.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.101, A:R.105, A:R.105 Water bridges: A:L.24, A:G.27 GOL.3: 3 residues within 4Å: Chain A: R.173, E.176, E.177 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.173, A:R.173, A:E.176, A:E.177, A:N.180 GOL.4: 2 residues within 4Å: Chain A: R.123, D.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.123 GOL.5: 6 residues within 4Å: Chain A: L.81, S.82, D.85, E.171, R.174, V.175 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.85, A:D.85, A:E.171, A:R.174, A:R.174

1 x 3NB: 1-(3,4,5-trihydroxyphenyl)octan-1-one(Non-covalent)

3NB.2: 10 residues within 4Å: Chain A: L.100, L.157, L.160, V.161, I.163, T.164, Q.179, L.206, K.209, L.210 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.100, A:L.160, A:V.161, A:L.206, A:K.209, A:L.210 Hydrogen bonds: A:I.163, A:T.164, A:Q.179 Water bridges: A:T.164, A:T.164, A:D.165, A:D.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W.J. et al., Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity. Chem.Biol. (2015)

Release Date

2015-09-09

Peptides

Nuclear receptor subfamily 4 group A member 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 4 group A member 1

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